Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17220 49 / 2e-07 ATPMEI2 pectin methylesterase inhibitor 2 (.1) AT1G48020 45 / 5e-06 ATPMEI1 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) AT1G50340 40 / 0.0003 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017347 [exp] 89 / 3e-22 AT3G17220 81 / 2e-19 pectin methylesterase inhibitor 2 (.1) Lus10041650 [exp] 89 / 3e-22 AT1G48020 85 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10017345 [exp] 87 / 8e-22 AT3G17220 89 / 1e-22 pectin methylesterase inhibitor 2 (.1) Lus10001658 [exp] 84 / 1e-20 AT1G48020 86 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10017346 [exp] 81 / 1e-19 AT3G17220 79 / 8e-19 pectin methylesterase inhibitor 2 (.1) Lus10001659 [exp] 53 / 7e-09 AT1G48020 51 / 3e-08 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10019498 [exp] 46 / 3e-06 AT5G46970 87 / 1e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086600 [exp] 46 / 2e-06 AT5G38610 123 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10023114 pacid=23170367 polypeptide=Lus10023114 locus=Lus10023114.g ID=Lus10023114.BGIv1.0 annot-version=v1.0 ATGGCGAAGCTACGATTCTTACTACTACGAGCACTACTCATCTGCATAACAACGACACCACCTTCCGCCGCCTCCTTCGACATGGCGGCGATATGCGACA AAGCAGCCGACAAGGCCTTCTGCATCGGTTTCCTCAACTTGACCCGCGCCTACAAACCATCAATGGACATCGGGGGTGCCGGCAAGATAGCCCTCGACCT CAGCCTCCGGGCGGCAGGCGAAACTCGGCGCTACATCAAGTACCTTGCAGGACAAGCTACTAGTGGCGATCAGGGCAGGTACAAGACGTGCATAGCACTG TACGGCGACGCAGGCAAGTCGATCTCGAAAGCCAAGGCTTCGTTCGCTTTCGATGACTACGATTCGGCGAACGTCTACGCGGGGGCTGCTCAGAGCTATG CGGATACTTGCGATGAAGAGCTGGCTGGGTTGGGTTCTGATGACAAAGTTCATGAGATGCATCGCTTGTTGTTTGATGTTCTTGACGTTGTTTTGGTTGT TACTAATAAGTTGTTGACGGGTGGTTGA
AA sequence Show only first row Show all	>Lus10023114 pacid=23170367 polypeptide=Lus10023114 locus=Lus10023114.g ID=Lus10023114.BGIv1.0 annot-version=v1.0 MAKLRFLLLRALLICITTTPPSAASFDMAAICDKAADKAFCIGFLNLTRAYKPSMDIGGAGKIALDLSLRAAGETRRYIKYLAGQATSGDQGRYKTCIAL YGDAGKSISKAKASFAFDDYDSANVYAGAAQSYADTCDEELAGLGSDDKVHEMHRLLFDVLDVVLVVTNKLLTGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10023114 [exp]	0	1
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10040993 [exp]	9.8	0.9961
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10030843 [exp]	10.0	0.9976
AT2G35635		UBQ7, RUB2	RELATED TO UBIQUITIN 2, ubiqui...		Lus10018538 [exp]	14.0	0.9494
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10001279 [exp]	14.8	0.9971
					Lus10016593 [exp]	18.5	0.9969
AT5G13620			unknown protein		Lus10017168 [exp]	21.4	0.9969
					Lus10003843 [exp]	23.9	0.9969
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10003924 [exp]	26.2	0.9969
					Lus10004351 [exp]	28.2	0.9969
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10013442 [exp]	29.4	0.9822

Compare expression of checked genes

Lus10023114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.