Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80360 528 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 122 / 6e-31 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT4G33680 69 / 1e-12 AGD2 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G13810 66 / 1e-11 EDTS5, ALD1 eds two suppressor 5, AGD2-like defense response protein 1 (.1) AT2G24850 59 / 2e-09 TAT3 tyrosine aminotransferase 3 (.1) AT4G28410 57 / 1e-08 Tyrosine transaminase family protein (.1) AT1G72330 56 / 3e-08 ALAAT2 alanine aminotransferase 2 (.1.2.3) AT4G28420 52 / 3e-07 Tyrosine transaminase family protein (.1.2) AT4G26200 52 / 4e-07 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT1G01480 51 / 7e-07 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011479 [exp] 595 / 0 AT1G80360 497 / 2e-177 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023080 [exp] 123 / 6e-31 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10032388 [exp] 119 / 1e-29 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10018962 [exp] 82 / 7e-17 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10020959 [exp] 68 / 4e-12 AT2G13810 587 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Lus10010748 [exp] 66 / 2e-11 AT4G33680 724 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10035646 [exp] 62 / 3e-10 AT4G33680 723 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10037455 [exp] 56 / 4e-08 AT1G72330 893 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10003935 [exp] 55 / 6e-08 AT1G72330 880 / 0.0 alanine aminotransferase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G177000 [exp] 627 / 0 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G079200 [exp] 110 / 2e-26 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.007G088426 [exp] 106 / 7e-25 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.014G124100 [exp] 86 / 4e-18 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175400 [exp] 81 / 2e-16 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G115800 [exp] 65 / 3e-11 AT2G13810 601 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.002G091500 [exp] 64 / 4e-11 AT2G13810 581 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.007G013200 [exp] 62 / 2e-10 AT2G13810 644 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.014G012600 [exp] 58 / 7e-09 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G007800 [exp] 56 / 3e-08 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10023117 pacid=23170381 polypeptide=Lus10023117 locus=Lus10023117.g ID=Lus10023117.BGIv1.0 annot-version=v1.0 ATGGGTTCGTATGCAAAGCTTGCAAGGAGAGCTCTGGAGACGGAAATCCCTGTCATGGTTCAGATGCAGGAATTGGTCAAAGGAGCTGAGAATGTGATTT CATTAGCTCAGGGTGTGGTCTATTGGCTGCCTCCGAAAGAGGCGATGGAGAAGGTGAAAGAACTTATATGGGAGCCTTCTGTTAGCCGGTATGGTGCTGA TGAGGGCCTTCCTGAACTCAGAGAGGCACTAATGCGGAAGTTGCAAAGAGAAAACAAGTTGGTGAAATCGTCTGTCATGGTTACTGCAGGTGCAAACCAG GCTTTTGTGAATCTTGTGCTTGCTCTGTGTGATTCTGGAGACTCTTCGGTTATGTTTGCCCCCTACTACTTCAATGCATACATGTCGTTCCAGATGACGG GTGTTACCAACATATTAGTAGGCCCATGCGACCCAGAAACACTTCATCCTGATGCAGATTGGTTAAAGAAAACGCTAGCAGAAACCAAGCCAGTGCCAAA AGTTGTCACTGTAGTTAATCCAGGGAACCCGTCAGGAACCTATATTCCAGAGGAGCTCCTTAAGAGGATTTCAGATATTTGCCGCGAGGCTGGATCCTGG CTTATTGTAGATAATACATATGAGTATTTTATGTATGATGGGCTAAAACACACTTGTATAGAAGGAGATCACATCGTCAACATCTTTTCGTTTTCCAAAG CCTATGGAATGATGGGTTGGCGTGTTGGTTACATAGCCTACCCTTCAGGAGTGGACGGTTTCGCAGCATCTCTTCTCAAAATCCAAGACAACATACCGAT ATGCGCGACACTAATCTCGCAACACCTCGCACTCCACTCCCTAGAGATGGGTCCCGAGTGGGTGACCGAACGAGTAATGGGTCTGGTGAAGAACAGGGAA ATCTTGACCGAAGCACTCTCTCCGCTCGGGGAAAACGCTGTGAAAGGTGGCGAAGGCGCAATATACCTATGGGCAAGGCTACCGGACAAGTACATGGACG ATTCTAAAGTCGTGCATTGGCTAGTGAAGAAGCACGGGGTGGTGGTGGTACCGGGCGGTGCATGTGGGTGTCCGGGACATCTCCGGATCTCGTTTGGTGG ATTGGTCGAGGATGAATGCAGAGCTGCTGGTAAAAGGCTGAAGCTTGGGTTAGAGGACCTGTTAAGCCATGGGATGGTGGAGTAG
AA sequence Show only first row Show all	>Lus10023117 pacid=23170381 polypeptide=Lus10023117 locus=Lus10023117.g ID=Lus10023117.BGIv1.0 annot-version=v1.0 MGSYAKLARRALETEIPVMVQMQELVKGAENVISLAQGVVYWLPPKEAMEKVKELIWEPSVSRYGADEGLPELREALMRKLQRENKLVKSSVMVTAGANQ AFVNLVLALCDSGDSSVMFAPYYFNAYMSFQMTGVTNILVGPCDPETLHPDADWLKKTLAETKPVPKVVTVVNPGNPSGTYIPEELLKRISDICREAGSW LIVDNTYEYFMYDGLKHTCIEGDHIVNIFSFSKAYGMMGWRVGYIAYPSGVDGFAASLLKIQDNIPICATLISQHLALHSLEMGPEWVTERVMGLVKNRE ILTEALSPLGENAVKGGEGAIYLWARLPDKYMDDSKVVHWLVKKHGVVVVPGGACGCPGHLRISFGGLVEDECRAAGKRLKLGLEDLLSHGMVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10023117 [exp]	0	1
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10042302 [exp]	2.6	0.9306
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	4.5	0.9269
AT3G56460			GroES-like zinc-binding alcoho...		Lus10003691 [exp]	6.0	0.8921
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10036011 [exp]	6.2	0.8998
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006231 [exp]	7.1	0.9096
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10011479 [exp]	7.6	0.9303
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	13.0	0.8643
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	15.9	0.9272
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	17.5	0.9255
AT4G28400			Protein phosphatase 2C family ...		Lus10008556 [exp]	19.7	0.9210

Compare expression of checked genes

Lus10023117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.