Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15690 192 / 2e-60 Single hybrid motif superfamily protein (.1.2) AT1G52670 191 / 7e-60 Single hybrid motif superfamily protein (.1) AT3G56130 138 / 3e-39 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011480 [exp] 465 / 1e-167 AT1G52670 189 / 3e-59 Single hybrid motif superfamily protein (.1) Lus10009843 [exp] 132 / 1e-36 AT3G56130 242 / 1e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10040959 [exp] 132 / 3e-36 AT3G56130 238 / 6e-77 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10010226 [exp] 123 / 2e-33 AT3G56130 238 / 4e-78 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10017424 [exp] 122 / 4e-33 AT3G56130 240 / 4e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G172600 [exp] 226 / 1e-73 AT3G15690 249 / 9e-83 Single hybrid motif superfamily protein (.1.2) Potri.003G061400 [exp] 220 / 1e-70 AT3G15690 244 / 6e-80 Single hybrid motif superfamily protein (.1.2) Potri.008G074100 [exp] 127 / 5e-35 AT3G56130 229 / 1e-74 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.010G183200 [exp] 126 / 7e-35 AT3G56130 222 / 6e-72 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence Show only first row Show all	>Lus10023118 pacid=23170439 polypeptide=Lus10023118 locus=Lus10023118.g ID=Lus10023118.BGIv1.0 annot-version=v1.0 ATGGGTAAGGGGAATTCAGTTCGTCAATCATTGTCTGCCTGTAGTCTTGGAGTTTGTAACTTCAAAGTCGTAAGCATAGACATGGTTGGACAAAAGGATA TTACTCTAAGCCGACAGACCTACGTGCAGAAACCGGTGAAGATGAGGCCTTTACAGTATGCTCCTCCACCGGTGGCGTCAAAAGCATTAAGAATAAGCAG CAAGTTATCTATTGGAGCAGACGTTGACAACCCAGAAGCGTCCAAGTCACCAGTCAAGTCAAGCTACCGTATTCAGAATTTATCTGAGATTGAATCTCTG GTCTCCGAAATTTGCGACACGGACTCCATTGCAGAAGTCGAGTTAAAACTAGGCGCTTTCGAGCTGTCCGTGACTAGAGACTTGTCCAGGAATAAAGCTG AATCGCCTTGTGATCCTCGAGCTGATGTGTCTTCACCACCTGCTACTGCGAATGTAGATACAGATGCTTCCAATGGACCTGTTACCTGTACAGCATTGGT GGCACCATCGTCGTTAGGAATCAGGCCTTTTCTCGATAGAGCTGTCGATGAAGGTTTGGTGATAGTGAATTCACCAAGGGTCGGTTCTTTCCAAATATCT CGGACCACGAAGAAGAAGAAACGCGGACCTGATGCATGTAAAGAGAAGCAAATTGTGAGGGAGGGTCAAGTCCTTTGCTACATTCACCAGCTCGGAGGCC AACTTCCTGTTCAGACTGATGTCTCTGGTGAGGTAATCAAAATACTAAAGCAGGAAGGAGATCCTGTTGGATATGGAGATCCTCTGATAGCAATACTTCC TTCATTTCCTGGGATCAAGAAACTTAAGTAG
AA sequence Show only first row Show all	>Lus10023118 pacid=23170439 polypeptide=Lus10023118 locus=Lus10023118.g ID=Lus10023118.BGIv1.0 annot-version=v1.0 MGKGNSVRQSLSACSLGVCNFKVVSIDMVGQKDITLSRQTYVQKPVKMRPLQYAPPPVASKALRISSKLSIGADVDNPEASKSPVKSSYRIQNLSEIESL VSEICDTDSIAEVELKLGAFELSVTRDLSRNKAESPCDPRADVSSPPATANVDTDASNGPVTCTALVAPSSLGIRPFLDRAVDEGLVIVNSPRVGSFQIS RTTKKKKRGPDACKEKQIVREGQVLCYIHQLGGQLPVQTDVSGEVIKILKQEGDPVGYGDPLIAILPSFPGIKKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	0	1
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	1.4	0.9349
AT1G27510			Protein of unknown function (D...		Lus10002370 [exp]	1.7	0.9085
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	2.8	0.9121
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	3.9	0.8958
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10016199 [exp]	4.9	0.8634
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10027829 [exp]	4.9	0.8969
AT1G64355			unknown protein		Lus10032371 [exp]	5.1	0.8803
AT5G24314		PDE225, PTAC7	PIGMENT DEFECTIVE 225, plastid...		Lus10041454 [exp]	5.5	0.8930
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036690 [exp]	5.8	0.8746
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	11.0	0.8815

Compare expression of checked genes

Lus10023118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.