Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15750 1875 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT1G80490 1865 / 0 TPR1 TOPLESS-related 1 (.1.2) AT3G15880 1548 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT3G16830 1355 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 1327 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 231 / 7e-64 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 59 / 5e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 56 / 5e-08 RACK1B_AT receptor for activated C kinase 1B (.1) AT5G67320 56 / 1e-07 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G61210 56 / 2e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011481 [exp] 2152 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 1616 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10029876 [exp] 1333 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 1332 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10019401 [exp] 1002 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10006650 [exp] 968 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 875 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10038094 [exp] 843 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10001951 [exp] 701 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030000 [exp] 1974 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1934 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.018G128000 [exp] 1611 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G066800 [exp] 1600 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.013G081300 [exp] 1461 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G257900 [exp] 1437 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 1412 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.005G021700 [exp] 1358 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1341 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.018G023800 [exp] 1223 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023119 pacid=23170354 polypeptide=Lus10023119 locus=Lus10023119.g ID=Lus10023119.BGIv1.0 annot-version=v1.0 ATGTCATCTCTCAGTAGAGAGCTGGTCTTCCTGATTTTGCAGTTCCTTGATGAAGAGAAGTTCAAGGAGACTGTCCACAAGCTTGAGCAGGAATCTGGGT TTTACTTCAACATGAAGTATTTCGAGGATGAAGTGCATAGCGGGAATTGGGATGAGGTCGAGAAGTATCTCTCTGGGTTCACCAAGGTCGATGATAATCG TTATTCGATGAAAATATTTTTTGAGATAAGGAAGCAGAAGTACCTCGAAGCATTGGATAAGCATGACCGGTCCAAGGCAGTGGATATACTGGTTAAGGAT TTGAAAGTGTTTGCCACATTTAACGAGGAGCTTTTCAAGGAGATAACTCAGTTGTTGACATTGGAGAATTTTAGGGAGAATGAGCAACTATCCAAGTATG GGGATACGAAATCTGCAAGAGCAATTATGTTGGTGGAGCTCAAGAAGCTTATTGAAGCAAATCCTTTGTTTCGTGACAAATTGCAGTTTCCAAACCTGAA AAATTCAAGGCTAAGGACACTCATAAATCAAAGCTTGAACTGGCAGCACCAACTTTGTAAAAATCCTAGGCCAAATCCAGATATAAAAACTCTGTTTGTG GATCATTCATGTGGGCAACCAAATGGTGCTCGAGCTCCATCACCAGCAAATAATGCATTACTTGGGGCATTGCCAAAAGCTGGAGGGTTTCCACCTCTGG GTGCTCATGGGGGCTTTCCTTTATGTGTTCAGCCATTCCAGCCTACACCCGCAGCTGTTCCAGCACCCCTTGCAGCGGCTCTGAAGCACCCTAGGACACC CCCTACTAACCCATCTGTGGATTATCCATCCGGAGATCCTGACCATGTTGCAAAGCGAACAAGGCCTATGGGAATAACTGATGAGGTCAATTTGCCGGTC AATGTTATGCCCGTATCCTTTCCTGGACATGGTCACAGTCCAGCTTTTAATACACCAGATGACTTGCCCAAGGTAGTATCCCGGAGTCTGAATCAGGGAT CATCTCCTATGAGTATGGATTTCCATCCTGCTCAGCAGACCCTTCTTTTAGTTGGCACTAATGTGGGGGACATTGGTTTGTGGGAAGTTGGTTCTAGAGA GCGGCTGGTTTTGAGAAACTTCAAGGTCTGGGATTTAAGCGCTTGTTCAATGCCTCTACAGTCAGCTCTTGTCAAGGATCCTGCTGTTTCTGTTAACCGT GTGATTTGGAGCCCCGATGGCAACTTGTTTGGAGTTGCATATTCCAGGCACATTGTGCAGATATATTCTTATCACGGAGGTGATGATGTAAGACAGCACT TGGAGATTGATGCTCATGTTGGCGGCGTCAATGATATTGCATTTTCCACCCCAAATAAGCAACTTTGTGTAATTACCTGTGGAGACGACAAGTTAATTAA GGTGTGGGATGCTGGTACTGGTGCAAAACAATATACCTTTGAAGGTCATGAGGCTCCTGTATATTCTGTCTGCCCTCACTATAAAGAGAATATTCAGTTT ATCTTCTCTACTGCCCTTGATGGAAAGATAAAAGCCTGGTTATATGATAATTTGGGATCCCGAGTAGATTATGAAGCTCCGGGTCGGTGGTGCACAACTA TGGCTTACAGTGCTGATGGTACAAGGTTATTTTCTTGTGGAACAAGCAAAGATGGTGAGTCATATATTGTGGAGTGGAATGAGAGTGAAGGTGCTGTCAA GAAGCACTACCAGGGTTTCCGGAAGCGTTCTCTGGGTGTTGTTCAATTTGATACGATGAAGAACAGATATTTGGCTGCTGGTGATGAGTTTGTCATCAAG TTCTGGGATATGGATAATGTCCAGCTTTTGACTTCAATAGATGCCGATGGAGGACTTCCGGCAAGCCCCCGGATCCGCTTCAATAAAGATGGCACTCTTT TAGCCGTCTCTGGCAATGACAATGTGATAAAGGTGTTGGCCAATAATGATGGTACTAGGTTGTTGCGCACGTTTGAAAATCTTTCCTATGATACATCACG AGCATCTGAGGCTCTATCAAAGCCTGCAATAAGTCCAATCTCAGCAGCTGCAGCAGCCGCAGCAGCAGCAGCTGCAACAAGTACTAGTGCTGGACTTGCT GAAAGGGCTAACTCTGCTGTCAACATTTCTGGCATGAATGGAGATGCACGGAACTTGGGAGATGTTAAGCCTAGAATAGCAGAAGAATCCAATGACAAGT CAAAGATTTGGAAGCTTACAGAAATAAATGAACCGGCTCAGTGTCGAACCTTGAGACTTCCAGAAAACTTGAGAGTAACAAAGATATCAAGGTTAATTTA TACCAATTCAGGCAATGCCATTCTGGCATTAGCATCTAATGCAATTCATTTGTTATGGAAATGGCAACGAAATGACCGTAATTCAACTGGAAAGGTTACT GCTGGTGTATCACCTCAACTATGGCAACCATCTAGTGGCATTTTGATGACCAATGACGTGACTGACACTAACCCTGAAGATTCAGTATCCTGCTTTGCTT TGTCAAAAAATGATTCTTACGTTATGTCAGCATCCGGAGGGAAGATTTCTCTGTTTAATATGATGACCTTCAAGACCATGACAACTTTCATGCCTCCCCC ACCGGCTGCAACATTTCTTGCGTTTCATCCTCAAGATAACAATATTATTGCTATTGGGATGGATGATTCAACAATTCAGATATATAATGTTCGTGTGGAT GAGGTAAAAAGCAAACTGAAAGGACATTCTAAGAGAATAACTGGCCTTGCATTCTCCCACGTGCTGAATGTGCTAGTTTCATCAGGAGCAGATGCCCAGA TTTGCGTATGGAGTTCGGATGGATGGGAAAAGCAAAAGGCGAGATTATTACAAGTCCCGGCTGGAAGGCCAGCGACAGCACAGTCAGACACTCGTGTGCA ATTTCATCAGGACCAGACTCACTTCCTTGTTGTACACGAAACTCAGCTTGCCATCTATGAAGCTTCAAAACTTGAATGTGTAAAACAGTGGCTCCCGCGT GAACCTTCTGCACCAATATCTCATGCAACATTCTCATGTGATAGTCAGCTGGTATATGCTAGCTTTTTGGATGCTAGTATCTGTGTGTTTAGTGCTGCAA ATCTCAGACTACGTTGCCGTATCAATCCTTCGGCTTATCTTCCAGCGAACGTCAGTGTCCCTAATGTGCACCCACTTGTAATCGCTGCACACCCACAAGA ACCGAATCAGTTTGCCATTGGGCTATCAGATGGCGGGGTTCATGTTTTCGAACCCGTTGAATCAGAAGGCAAATGGGGAGTCCCTCCACCACCCGAGAAT GGGTCGGTGAGCAGTGCTACAGCAACTCCGTCAGTTGGGGCCTCGGGTTCAGAACAAGCTCAGAGATGA
AA sequence Show only first row Show all	>Lus10023119 pacid=23170354 polypeptide=Lus10023119 locus=Lus10023119.g ID=Lus10023119.BGIv1.0 annot-version=v1.0 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKYFEDEVHSGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKD LKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFV DHSCGQPNGARAPSPANNALLGALPKAGGFPPLGAHGGFPLCVQPFQPTPAAVPAPLAAALKHPRTPPTNPSVDYPSGDPDHVAKRTRPMGITDEVNLPV NVMPVSFPGHGHSPAFNTPDDLPKVVSRSLNQGSSPMSMDFHPAQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLSACSMPLQSALVKDPAVSVNR VIWSPDGNLFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHVGGVNDIAFSTPNKQLCVITCGDDKLIKVWDAGTGAKQYTFEGHEAPVYSVCPHYKENIQF IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESYIVEWNESEGAVKKHYQGFRKRSLGVVQFDTMKNRYLAAGDEFVIK FWDMDNVQLLTSIDADGGLPASPRIRFNKDGTLLAVSGNDNVIKVLANNDGTRLLRTFENLSYDTSRASEALSKPAISPISAAAAAAAAAAATSTSAGLA ERANSAVNISGMNGDARNLGDVKPRIAEESNDKSKIWKLTEINEPAQCRTLRLPENLRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKVT AGVSPQLWQPSSGILMTNDVTDTNPEDSVSCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVD EVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQICVWSSDGWEKQKARLLQVPAGRPATAQSDTRVQFHQDQTHFLVVHETQLAIYEASKLECVKQWLPR EPSAPISHATFSCDSQLVYASFLDASICVFSAANLRLRCRINPSAYLPANVSVPNVHPLVIAAHPQEPNQFAIGLSDGGVHVFEPVESEGKWGVPPPPEN GSVSSATATPSVGASGSEQAQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	0	1
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	1.4	0.9303
AT1G53050			Protein kinase superfamily pro...		Lus10025773 [exp]	1.4	0.9217
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	4.0	0.9160
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10038680 [exp]	4.2	0.8982
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	4.5	0.9086
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	4.6	0.9168
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	7.7	0.8934
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10042298 [exp]	10.4	0.8881
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	10.8	0.8594
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	11.2	0.9010

Compare expression of checked genes

Lus10023119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.