Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15800 385 / 4e-134 Glycosyl hydrolase superfamily protein (.1) AT2G26600 330 / 5e-114 Glycosyl hydrolase superfamily protein (.1.2) AT1G32860 264 / 3e-86 Glycosyl hydrolase superfamily protein (.1) AT2G27500 251 / 1e-82 Glycosyl hydrolase superfamily protein (.1.2.3) AT2G16230 254 / 1e-81 O-Glycosyl hydrolases family 17 protein (.1) AT5G42100 253 / 1e-81 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT4G18340 249 / 1e-80 Glycosyl hydrolase superfamily protein (.1) AT1G30080 242 / 7e-78 Glycosyl hydrolase superfamily protein (.1) AT4G34480 238 / 2e-75 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 229 / 5e-72 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011482 [exp] 526 / 0 AT3G15800 540 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10006659 [exp] 361 / 5e-126 AT2G26600 437 / 5e-156 Glycosyl hydrolase superfamily protein (.1.2) Lus10038099 [exp] 360 / 7e-124 AT2G26600 547 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Lus10033244 [exp] 263 / 8e-86 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 262 / 1e-85 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 260 / 1e-85 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 259 / 3e-85 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 258 / 2e-84 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10028122 [exp] 257 / 5e-84 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032600 [exp] 427 / 7e-151 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 415 / 3e-145 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.018G129500 [exp] 364 / 6e-126 AT2G26600 543 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Potri.006G067500 [exp] 363 / 1e-124 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Potri.011G152400 [exp] 279 / 3e-92 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 276 / 5e-91 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.011G084900 [exp] 273 / 6e-90 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 263 / 3e-86 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G202400 [exp] 260 / 2e-85 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G132700 [exp] 260 / 6e-85 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10023120 pacid=23170401 polypeptide=Lus10023120 locus=Lus10023120.g ID=Lus10023120.BGIv1.0 annot-version=v1.0 ATGAACTGGATAAAAGAGAACGTGCAGCGCTACTTACCGGGCACGAAAATCGTCGGGATCGCAGTTGGCAACGAGATCTTAGGCGGCACGGACATGGAGC TATGGGAAGCATTGCTTCCCTCCGTTAGAAATGTCTATTCTGCCCTCCAGAGGCTTGGACTGCACGACAAGATCGAGATCTCGAGTCCCAACTCAGAAGC TGTTTTCATGAATTCTTTCCCTCCTTCGGCTTGCATCTTCAGGCCCGATGTTGAGGTCTTCATGGTGCCGCTGCTACAGTTCTTCTCGAGAATCGGGTCG CCATTCTACATCAATGCCTACCCATTTTTGGCGTACAAGAGCGACCCGGAACATATCGACCTCAAATACGCACTCTTCCAGCCCAACTCCGGGATATGGG ACTCCAAGACCAACCTACATTATGACAACATGTTCGACGCTCAGGTCGACGCAGCATACGCAGCACTAGAGAAGGCCGGGTTCGGGAAGATGGAAGTGAT AGTGTCGGAGACAGGATGGGCATCGAACGGTGACCAGAACGAGGCCGGTGCGGACTTGCAGAATGCAAAGACGTACAACAAGAACCTGAAGAAGAGGCTG GCTAAGAAGAAAGGGACACCTTACCGGCCAAAGTCCAAAGTGAGGGCATACGTGTTTGCTTTGTTCAACGAGAATCTGAAGCCAGGGCCAACCTCTGAGA GGAACTTTGGGCTGTTTAAACCTGATGGCAGCATTGCTTACGACATCGGCTTCACTGGGCTCAAGGATTCTTCATCGTCTCGAGTTCGAGCTCGAGGGAT GGTCGTCGGTAGATGTTTGGTTTCTTTGCTGATTCTGGTTGGGCTAGTGAGTTCGATTTGGTGA
AA sequence Show only first row Show all	>Lus10023120 pacid=23170401 polypeptide=Lus10023120 locus=Lus10023120.g ID=Lus10023120.BGIv1.0 annot-version=v1.0 MNWIKENVQRYLPGTKIVGIAVGNEILGGTDMELWEALLPSVRNVYSALQRLGLHDKIEISSPNSEAVFMNSFPPSACIFRPDVEVFMVPLLQFFSRIGS PFYINAYPFLAYKSDPEHIDLKYALFQPNSGIWDSKTNLHYDNMFDAQVDAAYAALEKAGFGKMEVIVSETGWASNGDQNEAGADLQNAKTYNKNLKKRL AKKKGTPYRPKSKVRAYVFALFNENLKPGPTSERNFGLFKPDGSIAYDIGFTGLKDSSSSRVRARGMVVGRCLVSLLILVGLVSSIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15800			Glycosyl hydrolase superfamily...		Lus10023120 [exp]	0	1
AT3G15800			Glycosyl hydrolase superfamily...		Lus10011482 [exp]	4.9	0.9112
AT2G27140			HSP20-like chaperones superfam...		Lus10003356 [exp]	6.3	0.9117
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009316 [exp]	13.3	0.9107
AT1G13920			Remorin family protein (.1)		Lus10026649 [exp]	15.6	0.9085
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	15.7	0.9032
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10035654 [exp]	19.1	0.9010
					Lus10016944 [exp]	19.1	0.9038
AT1G75720			Plant protein of unknown funct...		Lus10036971 [exp]	21.4	0.8985
AT5G14500			aldose 1-epimerase family prot...		Lus10014621 [exp]	22.6	0.8808
AT2G34540			unknown protein		Lus10028123 [exp]	22.6	0.8700

Compare expression of checked genes

Lus10023120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.