Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15710 473 / 9e-168 prephenate dehydrogenase family protein (.1) AT5G34930 413 / 3e-140 arogenate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011483 [exp] 383 / 6e-135 AT1G15710 253 / 2e-84 prephenate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G201100 [exp] 554 / 0 AT1G15710 469 / 2e-166 prephenate dehydrogenase family protein (.1) Potri.006G062600 [exp] 437 / 9e-149 AT5G34930 858 / 0.0 arogenate dehydrogenase (.1) Potri.008G074500 [exp] 273 / 2e-90 AT5G34930 295 / 5e-96 arogenate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02153 [flax] [poplar] PDH Prephenate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10023121 pacid=23170301 polypeptide=Lus10023121 locus=Lus10023121.g ID=Lus10023121.BGIv1.0 annot-version=v1.0 ATGGCGGCATTTCCTCTCCGATCCGTCACCACCAAACACTCCACTCCTTCCATTTCCTTCCACTCCACCACTCACTCCCTCCTCCCGTCCTCTCGCTCCA ACGTATCACTCCCTCGCCATTCTCCACGGCAACCTTCCTCCTCCTCCTCCTCCTCGCGGTCCCTCCGCATCCGCTGCATCGACGCCGCTCAGCCCTACGA CTACGAGGCACACCTCCGCTCCCGCCACATCAAGTCCCAAACCCTGAAGATCGCCATCCTCGGATTCGGCAACTACGGCCAATTCCTCGCCAAAACCCTA ACCCGACAGGGCCACACCGTCCTCGCCCATTCCCGTACCGACTACACCGACGCCGCGGCCGCACTAGGAGTCCGATTCTACTCCAACCCTCACGACCTCT GCGAGAGCCATCCGGAGGTTGTGATCCTCTGCACCTCCATCCTCTCTACCGAGAAGGTACTCCAATCTTTCCCGTTCCAGAGGTTGAAACGCAACACTCT CTTCGTTGATGTCCTCTCCGTGAAAGAATTCGCCAAGACGATTTTGCTGAAGTATTTGCCTGTCGAGTTTGATGTGCTGTGTACTCACCCGATGTTTGGC CCCGAGAGTGGGAAGCATTCTTGGGCAGGGTTGACGTTTATGTACGACAAGGTCCGGATCGGAAATGACGAAGATAGGATGAGTAGGTGTTCCAAGTTCT TGGATAGCTTTGCTAAGGAAGGTTGCCGGATGGTGGAAATGAGCTGTGCCGAGCACGATCGACACGCTGCTGGATCGCAGTTTGTGACGCACACGCTCGG GAGAGTGTTGGAGAAGTATGGACTGGAATCGTCTCCGATCAACACCAAAGGTTACGAGACGCTGCTGAATTTGGTGGAGAACACCTCCGGGGATAGCTTC GAGCTGTATTACGGTCTGTTCATGTATAATCAGAATGCCATGGAGCAGCTGCAGAGGCTGGAGACTGCTTTTGAAGCTATTAAGATGGATTTGTTTGGGA AGTTGCATCAAGCTTATAGGAAGCAGTTGTTTGGGGATTCGGAAGGTGGTCGAGAGGAGCGGCCTAGGATTCAGAAACTGCTTCATAATGGCAATGGTTC TCCTCCTCCTTCCGGAACTGTCATAAGCCAAGATTCATCGAATTCTGGTTAG
AA sequence Show only first row Show all	>Lus10023121 pacid=23170301 polypeptide=Lus10023121 locus=Lus10023121.g ID=Lus10023121.BGIv1.0 annot-version=v1.0 MAAFPLRSVTTKHSTPSISFHSTTHSLLPSSRSNVSLPRHSPRQPSSSSSSSRSLRIRCIDAAQPYDYEAHLRSRHIKSQTLKIAILGFGNYGQFLAKTL TRQGHTVLAHSRTDYTDAAAALGVRFYSNPHDLCESHPEVVILCTSILSTEKVLQSFPFQRLKRNTLFVDVLSVKEFAKTILLKYLPVEFDVLCTHPMFG PESGKHSWAGLTFMYDKVRIGNDEDRMSRCSKFLDSFAKEGCRMVEMSCAEHDRHAAGSQFVTHTLGRVLEKYGLESSPINTKGYETLLNLVENTSGDSF ELYYGLFMYNQNAMEQLQRLETAFEAIKMDLFGKLHQAYRKQLFGDSEGGREERPRIQKLLHNGNGSPPPSGTVISQDSSNSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	0	1
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	1.0	0.9350
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	1.4	0.9267
AT1G69910			Protein kinase superfamily pro...		Lus10036691 [exp]	2.2	0.8980
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	2.4	0.8999
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10001387 [exp]	3.5	0.8989
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022665 [exp]	3.5	0.8951
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10017633 [exp]	3.6	0.8790
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	3.7	0.8949
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	4.5	0.8810
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10022889 [exp]	6.2	0.8432

Compare expression of checked genes

Lus10023121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.