Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80030 574 / 0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 345 / 2e-113 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G39960 332 / 3e-109 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 328 / 7e-108 DNAJ heat shock family protein (.1) AT5G48030 182 / 7e-52 GFA2 gametophytic factor 2 (.1) AT1G28210 164 / 1e-45 ATJ1 DNAJ heat shock family protein (.1.2) AT5G22060 140 / 1e-36 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 120 / 1e-29 ATJ3 DNAJ homologue 3 (.1.2) AT1G10350 96 / 1e-21 DNAJ heat shock family protein (.1) AT3G62600 94 / 1e-20 ATERDJ3B DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011484 [exp] 861 / 0 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10000631 [exp] 338 / 1e-111 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 334 / 3e-110 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10031336 [exp] 335 / 8e-110 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031908 [exp] 332 / 1e-108 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10035920 [exp] 315 / 1e-102 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1) Lus10025742 [exp] 258 / 7e-82 AT2G22360 504 / 4e-179 DNAJ heat shock family protein (.1) Lus10011934 [exp] 193 / 5e-56 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10027634 [exp] 192 / 2e-55 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031800 [exp] 627 / 0 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 344 / 1e-112 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.005G073900 [exp] 340 / 1e-112 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 335 / 1e-110 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.009G065500 [exp] 195 / 1e-56 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 192 / 1e-55 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G160200 [exp] 174 / 2e-48 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.002G141100 [exp] 137 / 2e-35 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 127 / 7e-32 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 127 / 8e-32 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023122 pacid=23170397 polypeptide=Lus10023122 locus=Lus10023122.g ID=Lus10023122.BGIv1.0 annot-version=v1.0 ATGGGGACTGCTGCGGCGGCCACGACCTTCTCCTTACTCCCTTCTCTCAGCTGCCCTTCCCCCGCTTCTCTCACTTCATCGTCTACTCCTCAATCGTCGC CATTCTTTGCACATTTAGCTCATCATCGCAGTAGCCTTGGTTCAGCAACTTCGGCTTGCTCTTTCCCTCGCACTCTCAAGCTCAAGCGGAAGGCTCGTTA CGCCCCTGTGGTGGTCCGTGCTTCTGCCGATTACTATTCCACTCTCGGTGTTCCCAAGTCCGCTTCCACTAAGGATATCAAAGCTGCGTATAGGAGATTA GCTCGCCAGTACCATCCTGATGTTAACAAGGAGCCTGGAGCAACTGATAAGTTTAAGGAGATTAGTGCTGCATATGAGGTACTTTCAGATGATAAAATGA GGGCTAGATATGATCAGTTTGGTGAAGCTGGAGTGAAGAGTACAGTTGGAGGACAATCAGATGCTTATACGACGGTGAATCCTTTTGATCTGTTTGAGAC ATTCTTTGGGTCGAACGTTGGTGGTTTTTCTGGTATGGACCAAACTGGCTTCAGGACAAGAGGTCGTAGTACAGTAAATAAGGGTGAAGACATAAGATAC GACATCAGTTTAGAATTTTCCGAGGCTATTTTTGGAGCTGAGAAGGAATTTGAGCTATCTCATTTAGAAACATGTGAAGCTTGCACTGGCACTGGAGCCA AGATTGGGTCCAAGAAGAGGATATGCTCAACTTGTGGAGGCAGAGGTCAAGTTATGAGAACTGAACAAACCCCTTTTGGCCTGTTCTCACAGGTTTCTGT CTGTCCTAATTGTGGTGGGGACGGGGAGGTCATCTCTGAATATTGTCGAAAATGTTCTGGAGAAGGACGTTTACGTACTAAAAAAAACATCAAAGTCAAA GTGCCTCCTGGGGTTACCTCGGGCAGTATTCTCAGAGTTGCTGGAGAAGGAGATGCTGGACCAAGAGGTGGTCCTGCGGGGGATCTTTATGTGTATCTCA ACGTTAAAGAGATAAGTGGAATCCAAAGAGATGGAATAACTCTCAGATCAACCATATCAATCAGCTATGTTGATGCAATTCTTGGAACCGTTGTCAAGGT AAATACAGTTGATGGTGAAAGTGAACTTAAAATTCCTTCTGGTACTCAACCAGGGGATGTACTAGTCCTGTCGAAGAAAGGGGCTCCGAAGCTGAATAAA CCATCCATACGCGGTGATCACTTGTTTTCAGTTAAAGTCGGAATACCAAAAAGAATAAGTGCTCAAGAGCGTGAATTACTCGAAGAACTTGCTTCTCTGA GTAATACCACTGCAGCTCGATCATCAACTAAGCCCAAGTCTCCAACAAGAACAGATGTTAGAGAGGAGAGAGCCACGGAACAAGCCGATGAAGGCGGAGA GCAGAGCAACGTCTGGACGCAGCTAAAAGATCTAGCTGGGGCTGCTGTGAATGGGGCTATGAAATGGCTGAAGAACAACCTTTGA
AA sequence Show only first row Show all	>Lus10023122 pacid=23170397 polypeptide=Lus10023122 locus=Lus10023122.g ID=Lus10023122.BGIv1.0 annot-version=v1.0 MGTAAAATTFSLLPSLSCPSPASLTSSSTPQSSPFFAHLAHHRSSLGSATSACSFPRTLKLKRKARYAPVVVRASADYYSTLGVPKSASTKDIKAAYRRL ARQYHPDVNKEPGATDKFKEISAAYEVLSDDKMRARYDQFGEAGVKSTVGGQSDAYTTVNPFDLFETFFGSNVGGFSGMDQTGFRTRGRSTVNKGEDIRY DISLEFSEAIFGAEKEFELSHLETCEACTGTGAKIGSKKRICSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCSGEGRLRTKKNIKVK VPPGVTSGSILRVAGEGDAGPRGGPAGDLYVYLNVKEISGIQRDGITLRSTISISYVDAILGTVVKVNTVDGESELKIPSGTQPGDVLVLSKKGAPKLNK PSIRGDHLFSVKVGIPKRISAQERELLEELASLSNTTAARSSTKPKSPTRTDVREERATEQADEGGEQSNVWTQLKDLAGAAVNGAMKWLKNNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10023122 [exp]	0	1
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10011484 [exp]	1.0	0.9508
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10017039 [exp]	4.2	0.9133
AT2G46420			Plant protein 1589 of unknown ...		Lus10004015 [exp]	6.3	0.8898
AT5G11480			P-loop containing nucleoside t...		Lus10011673 [exp]	10.4	0.8905
AT3G51510			unknown protein		Lus10033303 [exp]	10.6	0.8980
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10023202 [exp]	10.8	0.9048
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	14.2	0.8905
AT1G31410			putrescine-binding periplasmic...		Lus10034754 [exp]	15.5	0.8056
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10042356 [exp]	18.1	0.8444
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10016221 [exp]	18.7	0.8623

Compare expression of checked genes

Lus10023122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.