Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15920 372 / 2e-118 Phox (PX) domain-containing protein (.1) AT4G32160 162 / 1e-41 Phox (PX) domain-containing protein (.1) AT2G25350 152 / 8e-39 Phox (PX) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002925 [exp] 159 / 9e-41 AT4G32160 709 / 0.0 Phox (PX) domain-containing protein (.1) Lus10001495 [exp] 146 / 1e-39 AT4G32160 323 / 9e-107 Phox (PX) domain-containing protein (.1) Lus10001496 [exp] 127 / 3e-31 AT4G32160 294 / 1e-92 Phox (PX) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G201900 [exp] 264 / 2e-77 AT3G15920 590 / 0.0 Phox (PX) domain-containing protein (.1) Potri.018G026000 [exp] 184 / 4e-49 AT4G32160 736 / 0.0 Phox (PX) domain-containing protein (.1) Potri.006G256000 [exp] 170 / 2e-44 AT4G32160 758 / 0.0 Phox (PX) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [flax] [poplar] PX PX domain
Representative CDS sequence Show only first row Show all	>Lus10023125 pacid=23170282 polypeptide=Lus10023125 locus=Lus10023125.g ID=Lus10023125.BGIv1.0 annot-version=v1.0 ATGAACCTCTACATACACGACCTCTCTCTACTCGACTCCGGCGACTTCTCCGATCCATTCCTCGACCGGTTCTCCCTTTCTCACCATCCTCATCTATATC ATTCTTCCTCTTTGTCAGCATCGTCAGCATCATCGTCGGCATCTTCTGCCGACGCCGTCTCACCCGATCAAACTCTTCCACCGCCACACCGCCATGACGG AACTTCGCCTCTGCCGCTGGGAATGGACTGGACTCCTCCTCCTCCTCCTCCTCCTCCTCGTCAATCGGAGAAGCAGGACTCGATCACTGGACATGATACT CAAGCAGGATGGAAATACTGGGTTACAGTCCCTTCATGGGTTGTAATGCCGGATTCGGCAGGTTCCAATCGCGCCACGTTCTACAGAGTTCAAGTTGGAC TGAGATCGCCTGATGGAGTTACTAACAGCAGAGAGATATTGCGTAGATTTAGCGATTTCTTGATGCTGCATTCTGAATTGAAAATAGAATTTCCCCTGAG AAAGCTGCCTCCAGCTCCACCCAAGAGGATTTTGAAACTGAAAAGCAAGTCATTGCTGGAAGAGCGTAGATGCTCGTTGGAAAATTGGATAGAACAACTA TTGTCCGACATCTATGTCTCTAGAAGTGCTGCCGTGGGTATCTTTTTTGAGCTTGAAGCCACTGTAAGGTCATTTTTTAATGGATTGCATGGAAGTTCTA ATTCTCATGGAAGTGGTATGGCACCTGCGAGCATTTCATCAGAGAATTACACTGATTTTCTTGAGGAAGAAGAATCTGACAGTAGAACAAGAGATGGAAA TGATAACTATGTCAAGCTGACATCAGCTAGAAGTGGTGAAGAGAGAAAGGACATCATCCTAACTCATGATCGTCTGGAGACATCTAAAGATAAAGGTGTT TGTGAGAATGAGAAGCTTGATGATGACGCTGATAGACTGTCAAGTAAGACCTCATTGGGAGTGGAGAGTGGTGATGCTTTAGGTGAAGAGGCTGATACTT CTAAAGTGGCTGATGTTCCTGTCAACTCCGCGATAAGGATACAAGATGGTGCACTAGTTGTTTTTCCATCATCTGAACATAACAATTTGAAGAGGATTTT TGATAAGTTGATGCAGAGACAAGCTATAGCCAAAACAGACATCATAGATCTTATTGGTAGGTTGAACCAAGAAGAAGCTATGAAGCAGTTCTTAATGACC AGAGTAAAGGATTTGGAAGCAGATCTTGAGACCACAAGGCATAGCTGCAAAGAAAACATGCAAGAAGCTGCGTTACTCGAAAGAGAGAGATTTACTCAAA TGCAGTGGGATGTTGAGGACCTGAATAATAAATTATTGGAGGTTGAGCTGAAATTGAAGTCTGAGCAGGATCAGAGGGTCAATCTTGACACGGTCAACAA TTCATTAGTCAAGGAGAACGAAATGTTGATGAACCAGCTGACTGCCGCAAAGCACGAGCATGAAAAGTTGCATAAACAACTGGACGAGGTAGATCTAAAG TCGAAATCGGAGGTAAAGCTTCTTGTAAAAGAAGTCAAGTCTCTTAGGAGCTCTCATTCGGAACTCAGACAAGAAGTTACCCGCTTGATGAAGGAAAAGG AGGATTTAGAGAGTGCTCTTCTGAAGGAAAGGGAAACAAAGGCGAATTCAACCACTGCCAATGGGAAGTTGCTGCGTGAATGTGAAATTCTTTGCGACAG GCTTCAACAATGTAGCGTTAACTTCCTCCTTCGAGAAAATAATAACATAGCTGTGGACACTTCCTCCTCACTCTCCGATGCCATTGGCCTGCTGGAGACT TCCGACAGTCGGATCGGTCTCCTCCTTGCCGAGGCGCAGCTACTGGCACAAGATGTAGCAGAAACATCCATGCTGGCACCAAATGTAGATGATTGGGATG CTGTGGATCTCCGGGATGTTGCAACGGACATGAAGCTGAGGAAGATGCTGGCCGAGACATTCATAAACTACGCTAAATCGAAAATGGATTTGAATTCGGC GATCCGCTGCACCCTCAACACTGCTGATGTCACAAAGGAGCACAACGAAGACACTTCACAGGCGTTGGAAGCATCAGTCCCTAAAGAGCGAGCCGTGTTG TTAAGCAAGATCCTGGAGAAGTAG
AA sequence Show only first row Show all	>Lus10023125 pacid=23170282 polypeptide=Lus10023125 locus=Lus10023125.g ID=Lus10023125.BGIv1.0 annot-version=v1.0 MNLYIHDLSLLDSGDFSDPFLDRFSLSHHPHLYHSSSLSASSASSSASSADAVSPDQTLPPPHRHDGTSPLPLGMDWTPPPPPPPPRQSEKQDSITGHDT QAGWKYWVTVPSWVVMPDSAGSNRATFYRVQVGLRSPDGVTNSREILRRFSDFLMLHSELKIEFPLRKLPPAPPKRILKLKSKSLLEERRCSLENWIEQL LSDIYVSRSAAVGIFFELEATVRSFFNGLHGSSNSHGSGMAPASISSENYTDFLEEEESDSRTRDGNDNYVKLTSARSGEERKDIILTHDRLETSKDKGV CENEKLDDDADRLSSKTSLGVESGDALGEEADTSKVADVPVNSAIRIQDGALVVFPSSEHNNLKRIFDKLMQRQAIAKTDIIDLIGRLNQEEAMKQFLMT RVKDLEADLETTRHSCKENMQEAALLERERFTQMQWDVEDLNNKLLEVELKLKSEQDQRVNLDTVNNSLVKENEMLMNQLTAAKHEHEKLHKQLDEVDLK SKSEVKLLVKEVKSLRSSHSELRQEVTRLMKEKEDLESALLKERETKANSTTANGKLLRECEILCDRLQQCSVNFLLRENNNIAVDTSSSLSDAIGLLET SDSRIGLLLAEAQLLAQDVAETSMLAPNVDDWDAVDLRDVATDMKLRKMLAETFINYAKSKMDLNSAIRCTLNTADVTKEHNEDTSQALEASVPKERAVL LSKILEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15920			Phox (PX) domain-containing pr...		Lus10023125 [exp]	0	1
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10026973 [exp]	1.4	0.8974
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10023316 [exp]	7.0	0.8985
AT5G25270			Ubiquitin-like superfamily pro...		Lus10040001 [exp]	9.0	0.8909
AT2G36670			Eukaryotic aspartyl protease f...		Lus10027732 [exp]	12.0	0.8808
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10020737 [exp]	21.4	0.8546
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008491 [exp]	27.5	0.8733
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	29.7	0.8871
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	34.5	0.8691
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	36.7	0.8730
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	37.6	0.8762

Compare expression of checked genes

Lus10023125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.