Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80100 178 / 5e-58 AHP6 histidine phosphotransfer protein 6 (.1.2) AT5G39340 103 / 1e-28 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT1G03430 102 / 3e-28 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT3G21510 99 / 5e-27 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT3G29350 98 / 2e-26 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT3G16360 83 / 1e-20 AHP4 HPT phosphotransmitter 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011487 [exp] 259 / 2e-89 AT1G80100 194 / 6e-64 histidine phosphotransfer protein 6 (.1.2) Lus10033999 [exp] 111 / 1e-31 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10012777 [exp] 110 / 2e-31 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10000926 [exp] 88 / 1e-22 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10038280 [exp] 83 / 9e-21 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10025821 [exp] 82 / 4e-20 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10035596 [exp] 77 / 2e-18 AT3G16360 103 / 5e-29 HPT phosphotransmitter 4 (.1.2) Lus10002256 [exp] 77 / 2e-18 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10003256 [exp] 77 / 4e-18 AT1G03430 105 / 1e-29 histidine-containing phosphotransfer factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032400 [exp] 195 / 8e-65 AT1G80100 204 / 2e-68 histidine phosphotransfer protein 6 (.1.2) Potri.001G191900 [exp] 195 / 1e-64 AT1G80100 204 / 2e-68 histidine phosphotransfer protein 6 (.1.2) Potri.010G027100 [exp] 110 / 2e-31 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.013G028300 [exp] 108 / 8e-31 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.008G197600 [exp] 108 / 8e-31 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.006G098200 [exp] 108 / 8e-31 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.016G113500 [exp] 107 / 3e-30 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.005G040400 [exp] 104 / 3e-29 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.014G136200 [exp] 104 / 3e-29 AT1G03430 163 / 2e-52 histidine-containing phosphotransfer factor 5 (.1) Potri.001G189900 [exp] 86 / 6e-22 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [flax] [poplar] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Lus10023127 pacid=23170390 polypeptide=Lus10023127 locus=Lus10023127.g ID=Lus10023127.BGIv1.0 annot-version=v1.0 ATGAACCGTTTACTCTCCCTCCTCTTCCACCAGGGAGTGTTGGACGAGCAGTTCTTGCAGCTGCAGCAGCTCGAAGATGAGAGCTCCCCGAACTTCGTAT CGGAAGTAGTCAACATCTACTTCCATGAGTCCGAGAAGCTCCTCACTTCCCTCCGCCGACTTCTAATGAAGGGGGAGGAATCGGAGGGGTGTGAATATGG GAAGATAGGGATACACTTGAATCAGTTTATGGGGAGTAGCTCAAGCATCGGTGCTAAGAGGGTGAGGAATGTTTGCCTCGCTTTTCGGTCAGCTTCTGAC CGGACCAATAGACACGGGTGTTTGAGAGCTCTAGAGGTGTTGGAGCATGAGTACTGCTACCTCAAGAACAAGCTGCATGAACTCTTCCAATTAGAGCAGC AGAGAGTGCTGGCAGCTGGAGTTAGGTACCCAATGCAGCACCATCACCAGAACATCCACAACAACATCAATAGCTAA
AA sequence Show only first row Show all	>Lus10023127 pacid=23170390 polypeptide=Lus10023127 locus=Lus10023127.g ID=Lus10023127.BGIv1.0 annot-version=v1.0 MNRLLSLLFHQGVLDEQFLQLQQLEDESSPNFVSEVVNIYFHESEKLLTSLRRLLMKGEESEGCEYGKIGIHLNQFMGSSSSIGAKRVRNVCLAFRSASD RTNRHGCLRALEVLEHEYCYLKNKLHELFQLEQQRVLAAGVRYPMQHHHQNIHNNINS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10023127 [exp]	0	1
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10004088 [exp]	2.8	0.8900
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012478 [exp]	2.8	0.8637
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	6.3	0.8689
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	6.8	0.8814
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10038933 [exp]	11.6	0.8119
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Lus10003500 [exp]	13.4	0.8046
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	16.0	0.8747
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10035135 [exp]	20.7	0.8661
AT4G22000			unknown protein		Lus10008487 [exp]	23.4	0.8649
AT1G66540			Cytochrome P450 superfamily pr...		Lus10032856 [exp]	27.7	0.8642

Compare expression of checked genes

Lus10023127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.