Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15850 407 / 1e-141 JB67, FADB, ADS3, FAD5 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) AT1G06080 326 / 1e-110 ADS1 delta 9 desaturase 1 (.1) AT3G15870 320 / 2e-107 Fatty acid desaturase family protein (.1) AT2G31360 306 / 7e-103 ADS2 16:0delta9 desaturase 2 (.1) AT1G06120 303 / 9e-102 Fatty acid desaturase family protein (.1) AT1G06090 302 / 3e-101 Fatty acid desaturase family protein (.1) AT1G06100 299 / 3e-100 Fatty acid desaturase family protein (.1) AT1G06350 293 / 9e-98 Fatty acid desaturase family protein (.1) AT1G06360 285 / 1e-94 Fatty acid desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011488 [exp] 612 / 0 AT3G15850 461 / 5e-163 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10017773 [exp] 336 / 2e-114 AT3G15850 380 / 4e-132 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10001279 [exp] 336 / 2e-114 AT3G15850 387 / 2e-134 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009469 [exp] 335 / 1e-113 AT3G15850 391 / 4e-136 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041042 [exp] 329 / 3e-111 AT3G15850 374 / 3e-129 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041043 [exp] 325 / 5e-110 AT3G15850 372 / 1e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009470 [exp] 323 / 1e-109 AT3G15850 358 / 7e-124 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10006180 [exp] 320 / 1e-107 AT3G15850 370 / 5e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10019726 [exp] 276 / 2e-91 AT3G15850 319 / 1e-108 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151800 [exp] 395 / 1e-136 AT3G15850 425 / 1e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G151700 [exp] 393 / 7e-136 AT3G15850 423 / 7e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G152100 [exp] 389 / 2e-134 AT3G15850 427 / 2e-149 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10023128 pacid=23170310 polypeptide=Lus10023128 locus=Lus10023128.g ID=Lus10023128.BGIv1.0 annot-version=v1.0 ATGACATTCATCAGTTCCCCGCCGCCGGCCAAATTCAAAACCGCCGCCATAACCGCCTCCCCCTTTCCTCCCCAAATTGGACGGAATCCACAACCCAGAA TCCCCAATTTCACCCCAACTTCAAAACCCACCACCATCTCTACTGCATATTCTCCGACGAAGGGCGGCACCGGTGCCGCCACGAGGTTCAATGTAGCAGC AGCAACAGCTCGCAACTTTGAAGCGGAAGAGAATCATAACAGGAGGAGGAGGAGGAGGAGGAAAATCCTGCTGTCGGACGTGGCGGTGGAGAGGGAGAGG AAGTTGTTCGGAAGGAAATGGAACACGGTGGATGTATCGACGGCAGCGGTGGTCCTGGCGATGCATTTGCTTGCTCTGCCGGCGCCTCTCTGTTTCAGCT GGCCGGCGTTCTCGGTGGCGGTTTTACTCTACGTCGTCACCGGACTGTTTGGAATTACTCTGTCGTTTCATAGGCATCTCTCCCACCGGAGTTTCAGGCT CCCCAAGTGGCTCGAGTACTTGTTCGCTTACTGTGGCGTTCATGCTCTCCAGGGGAATCCAATAGACTGGGTAAGCACACACAGGTACCACCATCAGTTC TGCGATTCAGAAAGAGACCCACACAGCCCACTTGAAGGCTTCTGGTTCAGTCACATGAGCTGGCTCTTTGACACCAACTATATCGCTCAAAGGTGTGGAG GGAAGAACAATGCTGGAGATTTGGAGAGTCAACCTTTCTATCAGTTGATGAGAGCTACCTATGTTGTTCATCCAATTGCTCTCGGATTACTTCTTTATTC GCTTGGTGGATTCTCGTTTCTCGTATGGGGAATGGGTGTGAGGGTAACATGGGTTTACCATATAACATGGCTGGTGAACTCTGCTTGTCATGTTTGGGGA GTTCAAGATTGGAATACCGGTGATTTATCTCGAAACAATTGGTGGGTTGCAGTGCTGGCATTTGGAGAAGGTTGGCACAACAACCATCACGCATTCGAGT ACTCGGCTAGACATGGCTTGAAATGGTGGCAGATCGATATGACATGGTATACTATCAGGATTCTTCAGGCTCTTCGATTGGCTTCCGACGTTAAGCTTCC TACCGAGTCTCACAGGAAGAAGATGATGATGGGTTTTGAAGGGGTTGAGTCAAGATAG
AA sequence Show only first row Show all	>Lus10023128 pacid=23170310 polypeptide=Lus10023128 locus=Lus10023128.g ID=Lus10023128.BGIv1.0 annot-version=v1.0 MTFISSPPPAKFKTAAITASPFPPQIGRNPQPRIPNFTPTSKPTTISTAYSPTKGGTGAATRFNVAAATARNFEAEENHNRRRRRRRKILLSDVAVERER KLFGRKWNTVDVSTAAVVLAMHLLALPAPLCFSWPAFSVAVLLYVVTGLFGITLSFHRHLSHRSFRLPKWLEYLFAYCGVHALQGNPIDWVSTHRYHHQF CDSERDPHSPLEGFWFSHMSWLFDTNYIAQRCGGKNNAGDLESQPFYQLMRATYVVHPIALGLLLYSLGGFSFLVWGMGVRVTWVYHITWLVNSACHVWG VQDWNTGDLSRNNWWVAVLAFGEGWHNNHHAFEYSARHGLKWWQIDMTWYTIRILQALRLASDVKLPTESHRKKMMMGFEGVESR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10023128 [exp]	0	1
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10012459 [exp]	2.2	0.9641
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10001645 [exp]	3.2	0.9569
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10014115 [exp]	4.2	0.9385
AT4G25170			Uncharacterised conserved prot...		Lus10009654 [exp]	4.5	0.9424
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10019771 [exp]	6.2	0.9196
AT2G23580		ATMES4, ABE4	ARABIDOPSIS THALIANA METHYL ES...		Lus10005402 [exp]	6.3	0.9436
AT3G47070			unknown protein		Lus10001204 [exp]	6.5	0.9471
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	11.2	0.9300
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10021662 [exp]	12.0	0.9312
AT3G52070			unknown protein		Lus10029504 [exp]	12.2	0.9013

Compare expression of checked genes

Lus10023128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.