Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52540 443 / 2e-156 Protein kinase superfamily protein (.1) AT3G15890 441 / 3e-155 Protein kinase superfamily protein (.1) AT1G60800 276 / 2e-87 NIK3 NSP-interacting kinase 3 (.1) AT3G09010 269 / 2e-87 Protein kinase superfamily protein (.1) AT5G38560 276 / 6e-87 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70460 274 / 7e-86 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G68690 273 / 1e-85 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT3G24540 268 / 1e-85 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT4G33430 270 / 4e-85 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT1G71830 269 / 9e-85 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011490 [exp] 686 / 0 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10019988 [exp] 414 / 3e-144 AT1G52540 348 / 2e-118 Protein kinase superfamily protein (.1) Lus10006985 [exp] 413 / 5e-144 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10001323 [exp] 412 / 3e-143 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10031673 [exp] 407 / 1e-141 AT1G52540 338 / 1e-114 Protein kinase superfamily protein (.1) Lus10028715 [exp] 278 / 5e-89 AT1G71830 748 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10035071 [exp] 278 / 4e-88 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10017898 [exp] 278 / 3e-87 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10003066 [exp] 276 / 2e-86 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032100 [exp] 592 / 0 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 588 / 0 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.006G173800 [exp] 414 / 3e-144 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.012G132200 [exp] 402 / 3e-140 AT1G52540 335 / 3e-114 Protein kinase superfamily protein (.1) Potri.015G134500 [exp] 402 / 4e-140 AT1G52540 335 / 2e-113 Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 279 / 2e-87 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 266 / 2e-86 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 275 / 3e-86 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.005G124400 [exp] 272 / 3e-86 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.003G053301 [exp] 269 / 3e-85 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023130 pacid=23170285 polypeptide=Lus10023130 locus=Lus10023130.g ID=Lus10023130.BGIv1.0 annot-version=v1.0 ATGGGGTTCAGTTCCATGATTTGCTGCGGGAAAGCATTGGATCGGAAAGGGCAAGGAAAGAAGCAGGCAAGTTGGAGGATATTCTCACTGAAGGAGTTAC ACGCTGCTACTAACAACTTCAATTATGATAATAAGTTGGGTGAAGGTGGATTCGGCAGTGTTTACTGGGGTCAGCTTTGGGATGGATCACAGATTGCTGT CAAAAGGCTGAAAGTCTGGAGCAACAAGGCAGAGATGGAATTCGCTGTCGAAGTCGAAATACTGGCACGTGTCAGGCACAAAAACCTTCTCAGTCTTCGA GGTTATTGCGCTGAAGGCCAAGAACGTTTGATCGTTTACGACTACATGCCCAATCTAAGCTTGCTCTCTCATCTTCACGGCCAGCACTCATCAGAATGCC TTTTAGACTGGAAGAAACGGATGAACATCGCAATCGGATCAGCTGAAGGAATCGTGTATCTTCACCACCACGCAATCCCACACATAATACACCGAGACGT GAAGGCGAGCAACGTGCTGCTGGACTCGAACTTCCAAGCACAAGTGGCCGATTTCGGTTTCGCAAAGTTCATACCAGACGGTGCAACACACGTGACCACG AGAGTGAAAGGAACGCTCGGATACCTAGCCCCCGAGTATGCGATGCTGGGGAAAGCATCGGAGAGTTGCGATGTATACAGCTTCGGGATCCTGCTTTTGG AGCTTTGCAGCGGGAAGAAGCCGCTGGAGAAAGTGAATGCAACCGTGAAGCGAACCATCACGGAATGGGCCTTACCATTGGCGTGTGCCAAGAAGTTCGA TGAAGTTGCTGACCCGAGGCTGAACAGGAAGTTCGAGGAAGCGGAGATGAAAAGGGTGGTTCTTGTGGCTCTTGTTTGTACTCAGACTAAGCCCGAGAAA CGGCCCACGATGCTGGAAGTGGTGGAAATGTTGAAGGGGGATTCGAAGGAGAAGTTGGGTGAGCTGGAGAATGATGAGTTGTTCAGGAGTACTCCAGAGG GTGGTGAATCAAGATTGGCTGCAGAGGAAGAAAGCTCCGACATGATCTCTGAAGAGAAGGATGATGATAAACCAGAGATCGTTAGAGATTCTTAG
AA sequence Show only first row Show all	>Lus10023130 pacid=23170285 polypeptide=Lus10023130 locus=Lus10023130.g ID=Lus10023130.BGIv1.0 annot-version=v1.0 MGFSSMICCGKALDRKGQGKKQASWRIFSLKELHAATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKAEMEFAVEVEILARVRHKNLLSLR GYCAEGQERLIVYDYMPNLSLLSHLHGQHSSECLLDWKKRMNIAIGSAEGIVYLHHHAIPHIIHRDVKASNVLLDSNFQAQVADFGFAKFIPDGATHVTT RVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELCSGKKPLEKVNATVKRTITEWALPLACAKKFDEVADPRLNRKFEEAEMKRVVLVALVCTQTKPEK RPTMLEVVEMLKGDSKEKLGELENDELFRSTPEGGESRLAAEEESSDMISEEKDDDKPEIVRDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52540			Protein kinase superfamily pro...		Lus10023130 [exp]	0	1
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	16.2	0.8448
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10020771 [exp]	18.5	0.8378
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	20.2	0.8316
AT3G21865		PEX22	peroxin 22 (.1)		Lus10039690 [exp]	22.8	0.8497
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	29.4	0.8231
					Lus10013206 [exp]	33.9	0.7995
AT1G61780			postsynaptic protein-related (...		Lus10007644 [exp]	36.5	0.8188
AT4G16710			glycosyltransferase family pro...		Lus10018891 [exp]	39.7	0.7731
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	43.0	0.8253
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10021746 [exp]	50.6	0.7753

Compare expression of checked genes

Lus10023130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.