Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52600 339 / 4e-121 Peptidase S24/S26A/S26B/S26C family protein (.1) AT3G15710 303 / 1e-106 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011491 [exp] 328 / 7e-117 AT1G52600 307 / 9e-109 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10030080 [exp] 285 / 1e-99 AT1G52600 293 / 8e-103 Peptidase S24/S26A/S26B/S26C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171200 [exp] 352 / 4e-126 AT1G52600 348 / 7e-125 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.003G062800 [exp] 351 / 1e-125 AT1G52600 350 / 2e-125 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.018G005800 [exp] 280 / 1e-97 AT1G52600 289 / 3e-101 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.006G274900 [exp] 159 / 4e-51 AT1G52600 132 / 1e-40 Peptidase S24/S26A/S26B/S26C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [flax] [poplar] Peptidase_SF PF00717 [flax] [poplar] Peptidase_S24 Peptidase S24-like
Representative CDS sequence Show only first row Show all	>Lus10023131 pacid=23170394 polypeptide=Lus10023131 locus=Lus10023131.g ID=Lus10023131.BGIv1.0 annot-version=v1.0 ATGGGGTGGATCGGAGACACCGTTGATTCCGTCAAGTCCATCCAGATCCGGCAGCTTCTTTCTCAGGGCGTCAGTCTTGGAATGATTGTTACCTCTGCTT TAATAATATGGAAAGTGTTAATGTGCGTCACTGGCAGCGAATCTCCGGTAGTGGTTGTGCTTTCTGGAAGCATGGAACCAGGATTCAAAAGGGGTGATAT TTTGTTTCTGCACATGAGTAACGATCCTATTCGTACTGGAGAGATAGTTGTCTTTAATGTTGATGGAAGGGAAATTCCAATAGTCCACCGCGTTATCAAG GTTCATGAAAGGCAAGACACTGGCGAAGTTGAAGTCTTAACCAAAGGAGACAATAACTATGGGGATGACAGGCTTTTGTATGCACAAGGCCAGCTTTGGC TGCAGCGGCATCACATCATGGGCAGGGCTGTTGGGTTCTTGCCATATGTTGGTTGGGTGACGATCATCATGACTGAGAAACCCATCATCAAGTATATACT GATTGGTGCACTGGGGCTGCTTGTTATAACTGCTAAAGACTGA
AA sequence Show only first row Show all	>Lus10023131 pacid=23170394 polypeptide=Lus10023131 locus=Lus10023131.g ID=Lus10023131.BGIv1.0 annot-version=v1.0 MGWIGDTVDSVKSIQIRQLLSQGVSLGMIVTSALIIWKVLMCVTGSESPVVVVLSGSMEPGFKRGDILFLHMSNDPIRTGEIVVFNVDGREIPIVHRVIK VHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITAKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10023131 [exp]	0	1
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	3.5	0.8964
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10014198 [exp]	5.5	0.8698
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10035470 [exp]	6.5	0.8932
AT3G05070			unknown protein		Lus10026367 [exp]	6.9	0.8685
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031896 [exp]	7.7	0.8469
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10029633 [exp]	9.5	0.8468
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	12.8	0.8675
AT5G13340			unknown protein		Lus10035960 [exp]	12.8	0.8472
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Lus10037823 [exp]	14.9	0.8389
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	15.7	0.8543

Compare expression of checked genes

Lus10023131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.