Plant FIBer expression Database

Lus10023132 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15780 47 / 2e-07 unknown protein
AT1G52550 38 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011492
[exp]
141 / 7e-44 AT3G15780 51 / 7e-09 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G192500
[exp]
44 / 4e-06 AT3G15780 47 / 1e-07 unknown protein
PFAM info
Representative CDS sequence
>Lus10023132 pacid=23170420 polypeptide=Lus10023132 locus=Lus10023132.g ID=Lus10023132.BGIv1.0 annot-version=v1.0
ATGGCGGCCCGCTGCTTTTCGACCACCGGCGGCGGCAGCAGCAGCACTGCAACCCAAGGCCGTCGACTAGCGTTCCCTATACATCGTAGCCAAATTACAA
CCTACTCTCGCCTTCCTTCTTCTTCTGTATCTTCTCGTTGTTTCCATGGATGCTTCAGAAGAAATCCTAACCAATACCTACTCTCCCACCGCCGCCGCCG
TATGTTCGCTCAGCTGACTCCGCCGCAATCCGACCCGCCTCCCGATGAGGAACCCCTGGCACTCACAGGACTGGTAGATAAAATAAGCAGATTTCAAGAC
AGGGTTCTGATATTCTCTGCGGTGTTTCTATGGATGTTTGCCTTCTTCTGGTATTCAGCTTGGGATGGCGGGAACAAGGGCGGCGGCGGTGGCGGCGGTT
TCGGCAAAAGATCCCGACTGCCGCCGTTTAGATAG
AA sequence
>Lus10023132 pacid=23170420 polypeptide=Lus10023132 locus=Lus10023132.g ID=Lus10023132.BGIv1.0 annot-version=v1.0
MAARCFSTTGGGSSSTATQGRRLAFPIHRSQITTYSRLPSSSVSSRCFHGCFRRNPNQYLLSHRRRRMFAQLTPPQSDPPPDEEPLALTGLVDKISRFQD
RVLIFSAVFLWMFAFFWYSAWDGGNKGGGGGGGFGKRSRLPPFR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15780 unknown protein Lus10023132
[exp]
0 1
AT3G15780 unknown protein Lus10011492
[exp]
8.0 0.8593
AT4G16760 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) Lus10004386
[exp]
9.6 0.9191
AT5G53390 O-acyltransferase (WSD1-like) ... Lus10014075
[exp]
11.4 0.9013
AT1G14290 SBH2 sphingoid base hydroxylase 2 (... Lus10036744
[exp]
12.0 0.8655
AT1G67340 HCP-like superfamily protein w... Lus10015784
[exp]
19.6 0.8697
AT1G27840 ATCSA-1 Transducin/WD40 repeat-like su... Lus10018680
[exp]
20.9 0.8835
AT5G51970 GroES-like zinc-binding alcoho... Lus10031660
[exp]
22.0 0.8947
AT1G34300 lectin protein kinase family p... Lus10028711
[exp]
22.2 0.8436
AT5G45230 Disease resistance protein (TI... Lus10012247
[exp]
28.6 0.8914
AT3G59310 Eukaryotic protein of unknown ... Lus10003247
[exp]
32.3 0.8874

Lus10023132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.