Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15390 321 / 9e-111 PDF1A, ATDEF1 peptide deformylase 1A (.1) AT5G14660 91 / 2e-21 DEF2, PDF1B, ATDEF2 peptide deformylase 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011493 [exp] 445 / 4e-160 AT1G15390 328 / 2e-114 peptide deformylase 1A (.1) Lus10022255 [exp] 96 / 5e-23 AT5G14660 337 / 2e-117 peptide deformylase 1B (.1.2) Lus10013086 [exp] 72 / 2e-14 AT5G14660 308 / 3e-105 peptide deformylase 1B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171800 [exp] 365 / 3e-128 AT1G15390 350 / 2e-122 peptide deformylase 1A (.1) Potri.001G346700 [exp] 103 / 4e-26 AT5G14660 337 / 2e-117 peptide deformylase 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01327 [flax] [poplar] Pep_deformylase Polypeptide deformylase
Representative CDS sequence Show only first row Show all	>Lus10023133 pacid=23170355 polypeptide=Lus10023133 locus=Lus10023133.g ID=Lus10023133.BGIv1.0 annot-version=v1.0 ATGAAAGCACTGTTCAGATGGAACGCAACAAATCTCTTGTCGATCTCCCGCCCGGGAAAACACTTGAAACCCTCCTCCACAACAACAATGGCGGCACCGA TAAGCTCCTTAACACAAGTTTTCGTTCCCAATCTCATCTCCAATTCTTCTAAGCTCGTTAACTCCAACGCAGACTTCAGAAGCCGCAAATCCGCGTCTTC CTCCGCAACAAAAACCAGGGCGGGCTGGCTTCTGGGTCTTGGAGCAAAGACAAAGCCGGTCCTGCCGGAGATTGTGAAAGCTGGCGACCCAGTGTTGCAC GAGCCAGCCCGTGAAGTTGACCCAAGGGATATCAGTTCGGAGAAGATACAGAAGATAATTGATGACATGGTTAATGTCATGAGGACTGCTCCTGGCGTTG GCCTTGCTGCTCCTCAGATCGGAATCCCATTGAAGATAATAGTATTGGAAGATAAACCAGAATATATTAGCTATGCTCCAAAAGAAGAGACCAAAGCACA GGATAGGCGGCCTTTTGAACTTCTGGTTATCCTGAACCCCAAGCTTGAGAAGAAAAGCAACAGAACTGCACTGTTTTTTGAAGGATGCTTAAGTGTTGAT GGATTTAGAGCAATGGTGGATCGGTATCTGGACGTTGAGGTTACAGGGCTGACCCGGGACGGCTTGCCAATCAAGGTCGAAGCATCGGGATGGCAGGCTC GTATCTTGCAGCACGAATGCGATCATTTGGATGGAACTCTCTACGTGGACAAGATGGTTCCCAGAACGTTTAGAACGGTCGAGAATCTGGACTTGCCTCT CGCCGATGGCTGCCCTCAGCAGGGTGTTCGCTAG
AA sequence Show only first row Show all	>Lus10023133 pacid=23170355 polypeptide=Lus10023133 locus=Lus10023133.g ID=Lus10023133.BGIv1.0 annot-version=v1.0 MKALFRWNATNLLSISRPGKHLKPSSTTTMAAPISSLTQVFVPNLISNSSKLVNSNADFRSRKSASSSATKTRAGWLLGLGAKTKPVLPEIVKAGDPVLH EPAREVDPRDISSEKIQKIIDDMVNVMRTAPGVGLAAPQIGIPLKIIVLEDKPEYISYAPKEETKAQDRRPFELLVILNPKLEKKSNRTALFFEGCLSVD GFRAMVDRYLDVEVTGLTRDGLPIKVEASGWQARILQHECDHLDGTLYVDKMVPRTFRTVENLDLPLADGCPQQGVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Lus10023133 [exp]	0	1
AT3G63510			FMN-linked oxidoreductases sup...		Lus10039605 [exp]	5.5	0.8344
AT1G30680			toprim domain-containing prote...		Lus10038433 [exp]	12.0	0.8237
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	17.5	0.8133
AT1G55140			Ribonuclease III family protei...		Lus10037645 [exp]	22.0	0.8249
					Lus10006809 [exp]	31.9	0.8139
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10024960 [exp]	38.2	0.8133
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10006235 [exp]	43.9	0.7247
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10022866 [exp]	47.3	0.7297
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	47.4	0.8074
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10011784 [exp]	54.4	0.7985

Compare expression of checked genes

Lus10023133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.