Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042625 [exp] 129 / 2e-38 ND / Lus10018809 [exp] 77 / 7e-18 ND / Lus10020450 [exp] 78 / 1e-17 ND / Lus10000886 [exp] 73 / 1e-15 ND / Lus10035382 [exp] 62 / 3e-11 AT4G15880 50 / 2e-06 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10033089 [exp] 62 / 6e-11 ND / Lus10032843 [exp] 54 / 2e-09 ND / Lus10012401 [exp] 51 / 5e-08 ND / Lus10009741 [exp] 52 / 9e-08 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023136 pacid=23170407 polypeptide=Lus10023136 locus=Lus10023136.g ID=Lus10023136.BGIv1.0 annot-version=v1.0 ATGAAAGGTATTAACCACGAAACAGAAACAACCAAGGGACATGATTCTTTGAATGAGGATGTCGGGAAACATGTATCCCAAGACGATGTTGGAAAAAAAA AAGATGATTCTGACGAATCCACCACTCCCACTTATGTGTCGTCGAAGGAGAAGTCAGTATTCCAGGTCGTTGCTCGTGCCGAAAAAGAAGCTGTGGAGGG GGGCAACATGATACACATCGACGATAGGGACAAACTAACTCCGGTAAACTATGATCAGCAAAAGATTGGCAAAAAGTTTGTATTGAACAAGCGGCTACTG CAACAATTAACCCTGGTGGAGAGCCCCGGTGGAGAGCAGGATAATGACGTGATGCAAGTGCTGAAGTACAAGATGGAGACCCTGAAGCATCCAAACCAGA TCTACAGCCTTGTCATTGATGCATTTTACCACCTGTTCAACAAGGAGGATATGCTGGTGAACAAGACCGTGATGAGACTGTGTGTGCCAATTACGATATT CTTCCCAACCCATGTTGGGGATGTGTTGAAGCACTACTACGTGTTTGGGATGGACATGAAGAAGAAGGATAAGTTTTTCCTTAACAACATGCTTTCCAAG AAGGACTTTGAGAATCAGCTGTATTACAAAGCTACGGGGACCCAGATGATGCAATATGCACGGTCATTCGTCCTTATGAACACATAA
AA sequence Show only first row Show all	>Lus10023136 pacid=23170407 polypeptide=Lus10023136 locus=Lus10023136.g ID=Lus10023136.BGIv1.0 annot-version=v1.0 MKGINHETETTKGHDSLNEDVGKHVSQDDVGKKKDDSDESTTPTYVSSKEKSVFQVVARAEKEAVEGGNMIHIDDRDKLTPVNYDQQKIGKKFVLNKRLL QQLTLVESPGGEQDNDVMQVLKYKMETLKHPNQIYSLVIDAFYHLFNKEDMLVNKTVMRLCVPITIFFPTHVGDVLKHYYVFGMDMKKKDKFFLNNMLSK KDFENQLYYKATGTQMMQYARSFVLMNT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023136 [exp]	0	1
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10016357 [exp]	1.4	0.9785
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10007246 [exp]	1.4	0.9712
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	2.0	0.9607
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10012866 [exp]	10.3	0.8277
					Lus10011497 [exp]	14.1	0.9709
					Lus10004849 [exp]	18.6	0.9192
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	18.9	0.8021
AT4G27390			unknown protein		Lus10037884 [exp]	19.0	0.9518
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10038486 [exp]	21.2	0.9400
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10027433 [exp]	22.9	0.9400

Compare expression of checked genes

Lus10023136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.