Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06250 45 / 8e-06 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT5G18960 45 / 1e-05 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT4G15090 44 / 1e-05 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT4G19990 44 / 2e-05 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT4G38170 42 / 8e-05 FRS9 FAR1-related sequence 9 (.1) AT3G22170 41 / 0.0002 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT2G27110 40 / 0.0002 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT1G52520 40 / 0.0005 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT4G38180 40 / 0.0005 FAR1_related FRS5 FAR1-related sequence 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010052 [exp] 94 / 5e-24 ND / Lus10034866 [exp] 64 / 4e-13 ND 38 / 0.002 Lus10031825 [exp] 40 / 0.0003 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247300 [exp] 46 / 3e-06 AT2G27110 289 / 3e-92 FAR1-related sequence 3 (.1.2.3) Potri.005G257600 [exp] 45 / 5e-06 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.008G011800 [exp] 45 / 6e-06 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.016G058500 [exp] 45 / 6e-06 AT4G38180 311 / 6e-95 FAR1-related sequence 5 (.1) Potri.003G110300 [exp] 45 / 1e-05 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.006G020600 [exp] 43 / 3e-05 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.016G018100 [exp] 43 / 4e-05 AT2G32250 793 / 0.0 FAR1-related sequence 2 (.1.2.3.4) Potri.015G139300 [exp] 43 / 4e-05 AT4G38180 359 / 1e-112 FAR1-related sequence 5 (.1) Potri.009G158400 [exp] 42 / 6e-05 AT2G27110 1138 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.004G196300 [exp] 42 / 7e-05 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023137 pacid=23170279 polypeptide=Lus10023137 locus=Lus10023137.g ID=Lus10023137.BGIv1.0 annot-version=v1.0 ATGTTTGCCATATTCCAAGAACAATTCAAACGTGTCCAAGAGTATCTTCTTGAAATTGTATCGACAACGGCAGCACACGGGGAAGTCGTGTACGTTGTGT ACAAGAAAGATGGCAATGGAAAGATATACGATAGACTTGGCTGTGCTAGGTGTGCCGTTGGTGAAGTGTCTTGCAACTGCAAGTGGTGGGGTACGATGAG AATCCTGTGTCGACACACCCTGATAGTGATGCATGTACTTGGTAGATTTGGTCACGAGAAGTTCCAGAATTTGCCTGACATGTACATCTTGAAGAGATGG ACTAGAGGTGTAAGAATTGGGTTTCTGGATGTTGTGGTTGCATGGCCACTGAACCGAGCTGAAAAGGAGGGCGAGATATATGTATGCCTCACTGCAAAAT TTGGTGCCACAGTTAGGGCTGTTTATAGGGTTGATCATTTGCACAGTTTGTTGGATGATGCAGCCGATGGTCCGGCTCTATAG
AA sequence Show only first row Show all	>Lus10023137 pacid=23170279 polypeptide=Lus10023137 locus=Lus10023137.g ID=Lus10023137.BGIv1.0 annot-version=v1.0 MFAIFQEQFKRVQEYLLEIVSTTAAHGEVVYVVYKKDGNGKIYDRLGCARCAVGEVSCNCKWWGTMRILCRHTLIVMHVLGRFGHEKFQNLPDMYILKRW TRGVRIGFLDVVVAWPLNRAEKEGEIYVCLTAKFGATVRAVYRVDHLHSLLDDAADGPAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Lus10023137 [exp]	0	1
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10003782 [exp]	1.0	0.9518
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10004215 [exp]	2.0	0.9026
					Lus10041665 [exp]	3.5	0.8995
AT2G21720			Plant protein of unknown funct...		Lus10010668 [exp]	9.2	0.8622
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10035445 [exp]	10.4	0.8127
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040244 [exp]	11.5	0.7324
					Lus10043281 [exp]	15.6	0.8015
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10016256 [exp]	17.7	0.6944
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	19.0	0.8106
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	19.3	0.8114

Compare expression of checked genes

Lus10023137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.