Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34370 226 / 3e-71 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 218 / 4e-68 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G44160 99 / 6e-23 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT5G66730 99 / 1e-22 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT5G03150 98 / 2e-22 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT1G03840 96 / 1e-21 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT1G55110 96 / 1e-21 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G50700 94 / 3e-21 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G60470 94 / 4e-21 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G45260 94 / 4e-21 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009435 [exp] 221 / 6e-68 AT1G34370 506 / 4e-177 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10006071 [exp] 190 / 3e-56 AT1G34370 448 / 2e-154 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10011495 [exp] 166 / 3e-51 AT1G34370 97 / 6e-25 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10010820 [exp] 100 / 4e-24 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 101 / 2e-23 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10004497 [exp] 98 / 2e-22 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10004840 [exp] 97 / 5e-22 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041723 [exp] 96 / 1e-21 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10041356 [exp] 96 / 2e-21 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094100 [exp] 349 / 2e-119 AT1G34370 236 / 3e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.004G217100 [exp] 226 / 8e-71 AT5G22890 316 / 2e-105 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.019G085400 [exp] 228 / 1e-70 AT1G34370 478 / 1e-165 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.013G114600 [exp] 224 / 1e-68 AT1G34370 495 / 3e-172 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.014G180600 [exp] 102 / 7e-24 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1) Potri.005G027200 [exp] 100 / 4e-23 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.006G129300 [exp] 98 / 2e-22 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 97 / 4e-22 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.013G019200 [exp] 97 / 4e-22 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.002G208444 [exp] 97 / 6e-22 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF00096 [flax] [poplar] zf-C2H2 Zinc finger, C2H2 type
Representative CDS sequence Show only first row Show all	>Lus10023138 pacid=23170383 polypeptide=Lus10023138 locus=Lus10023138.g ID=Lus10023138.BGIv1.0 annot-version=v1.0 ATGTCGTTTCCCGTCCCGGCGGGGAGCTCCGATCTTCAAGTCCCTCTGATGAACTTATCGACGGTCAGTAAGAGACTGGATTCACTGCATCAGCTCCTAT CCGAATCGGTCAAAACCAACACAGTAATAAGCCAAATTCAGATGGATATGGTGTCCTCCGAAATCTCCTCCGCCATTCAAAACACCATCATCAACGGCGC CGCTCTTCTCGCCTGCTCCTCCCAATCAACGCCAGATCTTCCTCCGCCTAAAATCTCCACCGAGCTCAAACCGATCGAAAAATATCGGGAAAAAGAGCCG TCTCCGTCTCCGCCGCCACCACCGCCGCAGTCGTCACTCAGCCAGATGAAGAATGAATCCGATTGCGATCTCGACGGTGGCGACGACGTGATTGAGCTAG ACGCCGTGGAGCTGCTAGCGGAGCACGTCCATTTCTGCTCGGTATGCGGGAAAGGATTCAAACGAGACGCTAATCTGAGGATGCACATGCGAGCCCACGG GAACCAATTCAAAACAGCGGAAGCCCTGGCGAAGCCTAAGGATGACGATAACTTGGAGGAGAAGAAGAAGAAGAAGGCGAGATTCTCTTGCCCGTACGAA GGATGCAATAGGAACAGGGAGCACAGCAAGTTCAAGGCGTTGAAGTCGGTGATCTGCGTGAGGAACCACTTCAAGAGGAGCCACTGCCCGAAGACGTATA CCTGCAGCCGATGCAACAAGAAGAACTTCTCGGTGGAGGCTGATTTAAGGAGCCATTTCAAGCACTGTGGGGAGTTGAGGTGGAAGTGCACCTGTGGGAC GAGCTTCTCCAGGAAGGACAAGCTGTTTGGGCACATGGCTTTGTTCGAAGGTCACATGCCGGCTGCTAGGGAGGAAGAGGGCGGAGGAGAAGAGATGAAG ATGATGGTGCAGCAGGAGGAGGAGGATGGAAATGGCGATGAGGGGTTGTTGTTTGATGATGGATTTGGTTCCATGGAGGATGTGTTGGAGTATCCTGCTT CTACTGATTGGCAAAGGGAGATGTCACTGTTTTGTGGATTTGGGCAGTGA
AA sequence Show only first row Show all	>Lus10023138 pacid=23170383 polypeptide=Lus10023138 locus=Lus10023138.g ID=Lus10023138.BGIv1.0 annot-version=v1.0 MSFPVPAGSSDLQVPLMNLSTVSKRLDSLHQLLSESVKTNTVISQIQMDMVSSEISSAIQNTIINGAALLACSSQSTPDLPPPKISTELKPIEKYREKEP SPSPPPPPPQSSLSQMKNESDCDLDGGDDVIELDAVELLAEHVHFCSVCGKGFKRDANLRMHMRAHGNQFKTAEALAKPKDDDNLEEKKKKKARFSCPYE GCNRNREHSKFKALKSVICVRNHFKRSHCPKTYTCSRCNKKNFSVEADLRSHFKHCGELRWKCTCGTSFSRKDKLFGHMALFEGHMPAAREEEGGGEEMK MMVQQEEEDGNGDEGLLFDDGFGSMEDVLEYPASTDWQREMSLFCGFGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10023138 [exp]	0	1
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	4.4	0.9169
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	9.2	0.8787
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10016764 [exp]	11.5	0.8819
AT3G61200			Thioesterase superfamily prote...		Lus10018847 [exp]	13.0	0.8868
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	13.5	0.9163
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	18.2	0.8691
AT1G48300			unknown protein		Lus10038034 [exp]	18.3	0.9116
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10012681 [exp]	21.0	0.8925
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10041906 [exp]	23.9	0.8679
AT4G31130			Protein of unknown function (D...		Lus10014344 [exp]	24.2	0.8819

Compare expression of checked genes

Lus10023138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.