Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47800 1546 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G62700 1541 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT3G13080 947 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT1G04120 941 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G13090 932 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G13100 910 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G60160 897 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G60970 881 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT3G21250 848 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT3G59140 843 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011498 [exp] 1945 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10022858 [exp] 924 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10024965 [exp] 921 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10018027 [exp] 885 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 878 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10013201 [exp] 859 / 0 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10027567 [exp] 857 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 853 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10017548 [exp] 826 / 0 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G205500 [exp] 1619 / 0 AT3G62700 2043 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.014G130500 [exp] 1605 / 0 AT3G62700 2059 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.001G362200 [exp] 929 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362300 [exp] 927 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G198401 [exp] 922 / 0 AT3G13080 1827 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T125806 [exp] 922 / 0 AT3G13080 1826 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124606 [exp] 917 / 0 AT3G13080 1830 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197200 [exp] 917 / 0 AT3G13080 1832 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197101 [exp] 912 / 0 AT3G13080 1862 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124506 [exp] 910 / 0 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023139 pacid=23170303 polypeptide=Lus10023139 locus=Lus10023139.g ID=Lus10023139.BGIv1.0 annot-version=v1.0 ATGGCGGTCGATGCTCAGCAGCTCTCGGACATGATGCTACAGCTCCACTCGATCTGGCTGATGCCCTTCCAAGTCGGGGCGGCTCTGTTCTTGCTCTACG GAACATTAGGAGCTTCGACTCTAACCGCATTGGTCGGGATAATTGCGGTGCTCTTGTTCGTCTTCTTCGGCACCAAGAGGAACAACAGCTTCCAGTTCAA TCTGATGACAAAACGGGATTCGAGGATGAAGGCCACAAACGAGCTGCTCAACTACATGAGGGTGATCAAGTTCCAGGCATGGGAGGAGCATTTCCAAAGG AGGATTCAGGACTTTCGAGATTCTGAATTCGAGTGGCTCTCGAAGTTTTTGTACTCGATTTCGGGAAATCTCGTCGTGATGTGGTGTACACCGCTCGTGA TTTCGACCTTCACTTTTGGGACAGCGATCCTGCTCGGTGTGAAACTCGATGCTGGGACAGTTTTTACTACCACTACAATATTCAAGATCCTTCAGGAGCC GATCAGGACTTTCCCTCAGTCGATGATCTCGCTCTCGCAGGCGATGATTTCGCTCGGGAGGCTGGATAAGTTCATGCTGAGTAAAGAGCTGATCGAGGAG AGCGTCGAGAGAACGGAAGGTTGCGACGGTAGAATCGCTGTCGAAATTCAGAATGGTTGTTTCAGTTGGGATGATGAAGCTGTTGATCAGCCGATTCTGA GAGGCATTAATCTCAAAGTCCAAAAGGGGGAGCTTACTGCAATTGTTGGCACCGTCGGGTCCGGGAAATCGTCTCTCCTAGGATCGATTCTCGGGGAGAT GCATAAGGTTTCCGGGAAGGTTAGGGTGTGCGGGTCGACTGCTTATGTGGCGCAGACGTCGTGGATTCAGAATGGGACCATCGAAGAGAATATCCTGTTC GGGTTGGCCATGGATCGGAGTAAGTACAATGAGGTTGTTAGGGTTTGTAGTCTCGAGAAGGACTTGGAAATGATGGAGTTTGGAGATCAGACCGAGATTG GGGAGAGGGGAATCAACCTTAGCGGCGGACAGAAGCAGAGGATTCAGCTTGCCAGAGCTGTTTATCAGGATTCTGATATTTATCTTCTTGATGATGTTTT CAGTGCTGTTGATGCTCATACTGGAACGGACATCTTTAAGGAATGCGTGCGAGGTGCACTAAAAGGCAAAACCATCTTGCTAGTGACCCACCAAGTGGAT TTCTTGCACAATGTGGATCTCATCACGGTGATGAGAGACGGGAAGGTTGTACAATCCGGAAAGTACAACGAGCTGCTCGAGTCCGGGACGGATTTCGAGA CACTGGTCGCCGCTCACGACACTGCTATGGAGCTCGTCGAAGCCGGTACGAGTAATGCAATAATCGATGAACATGATGTCGTCCCCAAAACTCCGAAATC TCCAGGAGGAGAAGCAAATGGAGGTGTGGACAAGGTGGTGTCATCTTCGGAACAACAGCCGAAATCGAACCAAGGGACCTCGAAGCTGATCGAAGAGGAG GCTCGAGAGACCGGCAAAGTTGGTGGCAACGTCTACAAGCAGTACTGCACCGAGGCGTTTGGATGGTGGGGTGTTGTGGGTGCGGTCGGGTTGTCACTTG TCTGGCAAGCGTCTCTGATGGCCGGAGATTACTGGCTGGCTTACGAGACTTCGGCTGACAGAGCTGAAACTTACAATCCAAGCTTCTTCATTTCTGTGTA TGCAATCATTGCGGCTGCATCGGTAGTGATCTTGGCGTTAAGAGCGGTGTTTGTTACTATCATGGGACTCAGGACTGCGCAGATTTTCTTCCATGGCATC CTTAACAGCATCTTGCGTGCTCCGATGTCCTTCTTCGATACCACGCCCTCTGGCAGAATCCTGAGCCGGGCGTCAACTGATCAAGCAAACATCGATCTCT TCCTGCCGTTCATCCTAGGCTTGACGCTGGCGATGTACGTGACAGTTCTGAGCATCTTGATCGTGATTTGCCAAAACGCTTGGCCGACGATATTCTTGGT GATTCCCCTTGGTTGGCTCAACCTCTGGTACCGGAGCTACTTCCTGGCTTCATCTAGAGAAATCACTCGGCTCGACTCAATCACGAAAGCCCCAGTGATC CATCATTTCTCGGAGAGCATTGCCGGGGTGATGACGATCAGGTCATTCAGGAAGGTTGGGAGGTTCTGCCAAGAGAATGTGATCAAAGTTGACTCCAACC TCCGGATGGATTTCCATAACAACAGTTCGAATGAGTGGCTAGGAGTCCGGCTCGAGCTTATTGGCATCGCCATCCTCTGCTCTTCTGCTGTCCTCTTGAT TGTCTTGCCTAGCAGCATCGTCAATCCAGCAAACGTCGGGCTCTCCCTATCGTATGGGCTGTCCCTAAACTCGGTCCTCTTCTTCGCGATATACACAAGC TGCTTCGTCGAGAACAGGATGGTTGCAGTGGAGAGGATAAAACAATTCACAAACATAGCATCAGAAGCAGCTTGGAGGATTCCTGATAGGAAACCTCCAC CAAGCTGGCCTACTCAGGGCAGAGTGGACCTTCAAGATTTACAAGTCCGGTACCGACCAAACACGCCCTTAGTTTTGAAAGGGATCACCCTCAGCATCAA CGGTGGGGATAAGGTAGGGATCGTGGGGCGGACTGGGAGCGGGAAGTCAACTCTGGTTCAAGTGTTCTTCAGGCTGGTGGAGCCTTCTTCAGGAAAGATC ATCATCGATGGGCTCGACATCTCGACGCTGGGCCTCCACGATCTCCGGTCGCGATTTGGGATCATCCCTCAGGAACCTGTTCTGTTCGAAGGGACCGTGA GGAGTAATGTCGACCCCATTGGGTTGTACTCCGATGACGACATTTGGAAGAGTCTGGAACGGTGCCAATTGAAGGATGTTGTCGCTGCCAAGCCCGAGAA GCTGGATGCTGCTGTGAGCGACAGCGGGGAGAACTGGAGCGTGGGGCAAAGGCAGCTGCTATGCCTAGGGAGGGTGCTGCTAAAGAAGAGCCGACTTCTA TTCATGGACGAAGCAACGGCATCAGTGGATTCGAAGACCGACGCGGTGATACAGAGGATAATAAGGGAAGATTTCGCTTCGTGCACGATCATCAGCATTG CTCACAGGATCCCCACCGTCATGGACTGCGATCGTGTCCTTGTCGTTGATGCCGGTCTGGCGAAAGAGTATGACAAGCCGGCGAAGTTGCTGGAGAGGCA GTCGCTGTTTGCAGCGTTGGTTCAGGAGTATGCGAACCGGTCGGCCGGTCTATGA
AA sequence Show only first row Show all	>Lus10023139 pacid=23170303 polypeptide=Lus10023139 locus=Lus10023139.g ID=Lus10023139.BGIv1.0 annot-version=v1.0 MAVDAQQLSDMMLQLHSIWLMPFQVGAALFLLYGTLGASTLTALVGIIAVLLFVFFGTKRNNSFQFNLMTKRDSRMKATNELLNYMRVIKFQAWEEHFQR RIQDFRDSEFEWLSKFLYSISGNLVVMWCTPLVISTFTFGTAILLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDKFMLSKELIEE SVERTEGCDGRIAVEIQNGCFSWDDEAVDQPILRGINLKVQKGELTAIVGTVGSGKSSLLGSILGEMHKVSGKVRVCGSTAYVAQTSWIQNGTIEENILF GLAMDRSKYNEVVRVCSLEKDLEMMEFGDQTEIGERGINLSGGQKQRIQLARAVYQDSDIYLLDDVFSAVDAHTGTDIFKECVRGALKGKTILLVTHQVD FLHNVDLITVMRDGKVVQSGKYNELLESGTDFETLVAAHDTAMELVEAGTSNAIIDEHDVVPKTPKSPGGEANGGVDKVVSSSEQQPKSNQGTSKLIEEE ARETGKVGGNVYKQYCTEAFGWWGVVGAVGLSLVWQASLMAGDYWLAYETSADRAETYNPSFFISVYAIIAAASVVILALRAVFVTIMGLRTAQIFFHGI LNSILRAPMSFFDTTPSGRILSRASTDQANIDLFLPFILGLTLAMYVTVLSILIVICQNAWPTIFLVIPLGWLNLWYRSYFLASSREITRLDSITKAPVI HHFSESIAGVMTIRSFRKVGRFCQENVIKVDSNLRMDFHNNSSNEWLGVRLELIGIAILCSSAVLLIVLPSSIVNPANVGLSLSYGLSLNSVLFFAIYTS CFVENRMVAVERIKQFTNIASEAAWRIPDRKPPPSWPTQGRVDLQDLQVRYRPNTPLVLKGITLSINGGDKVGIVGRTGSGKSTLVQVFFRLVEPSSGKI IIDGLDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNVDPIGLYSDDDIWKSLERCQLKDVVAAKPEKLDAAVSDSGENWSVGQRQLLCLGRVLLKKSRLL FMDEATASVDSKTDAVIQRIIREDFASCTIISIAHRIPTVMDCDRVLVVDAGLAKEYDKPAKLLERQSLFAALVQEYANRSAGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Lus10023139 [exp]	0	1
AT2G47800		EST3, ATMRP4, A...	ATP-binding cassette C4, multi...		Lus10011498 [exp]	1.4	0.9088
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10021111 [exp]	5.1	0.8674
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10026568 [exp]	13.4	0.8323
AT1G33110			MATE efflux family protein (.1...		Lus10003869 [exp]	20.0	0.8306
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	22.2	0.8651
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	30.3	0.8502
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10027819 [exp]	33.9	0.8372
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	35.6	0.8572
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Lus10040601 [exp]	47.9	0.8414
AT1G27340			Galactose oxidase/kelch repeat...		Lus10037030 [exp]	51.6	0.8502

Compare expression of checked genes

Lus10023139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.