Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 445 / 4e-153 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 429 / 7e-147 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26310 427 / 2e-146 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G57260 422 / 3e-144 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT1G13080 414 / 5e-141 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26320 413 / 8e-141 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT1G13110 407 / 3e-138 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT3G26210 406 / 6e-138 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT2G02580 403 / 9e-137 CYP71B9 "cytochrome P450, family 71, subfamily B, polypeptide 9", cytochrome P450, family 71, subfamily B, polypeptide 9 (.1) AT3G26290 402 / 1e-136 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011499 [exp] 838 / 0 AT3G26300 384 / 3e-130 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10024315 [exp] 378 / 1e-126 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012399 [exp] 377 / 1e-126 AT4G31500 516 / 2e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034505 [exp] 375 / 1e-125 AT4G31500 507 / 7e-177 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10033172 [exp] 372 / 2e-124 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034502 [exp] 368 / 6e-124 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012395 [exp] 367 / 2e-122 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10030924 [exp] 366 / 6e-122 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 365 / 2e-121 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G184000 [exp] 439 / 7e-151 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184400 [exp] 437 / 3e-150 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184900 [exp] 437 / 4e-150 AT3G26320 529 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.002G025350 [exp] 404 / 5e-137 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 404 / 7e-137 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025300 [exp] 400 / 2e-135 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.015G086000 [exp] 381 / 3e-128 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G089900 [exp] 377 / 1e-126 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.012G090000 [exp] 377 / 2e-126 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.002G025800 [exp] 377 / 3e-126 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10023140 pacid=23170356 polypeptide=Lus10023140 locus=Lus10023140.g ID=Lus10023140.BGIv1.0 annot-version=v1.0 ATGAAACTCCCGCCGGGCCCGCCTCCGCTCCCGGTGATCGGCAACCTCCACCAGCTAGGAAGCTGCCTCTACAAATCCTTCGACGACCTGTCCAAGAAGT ACGGCCCCGTCACTTTCCTGCGCCTGGGCCACGCGCCGACCGTCGTGATCTCCTCGAGCGAGTGCGCGCGTGAGGTGATGAAGGACAACGACCTCGAGTG TTGCAGCCGGCCTCTGGCGGCTGGGGCCAAGCTGCTGTCGTACAACTACCTCGACGTGGCGTTCTCCCCTTACTCCGACTACTGGCGCGAAATGCGCAAG CTCTTCATCTTCGAGCTCCTCAGCATGAAGCGGGTCCACACTTTCTGGTACGCGCGTGAGGAGCACGTCGACAAGATGGTTGGCCGGATGAAGGAAGCGG CGGCGCGTGGGGATACGGTCAACGTCAGCAAGCTGGTTTTCAACCTCACCGACGGGATCATCGGCACCGTCGCCTTCGGGAGGATGTACGCACAGGAAGA GTTCCAGGAAGGGTTCGTTAAGGTCGGTGTGCTCGAGGAGGCGATGGACATGTTGAACGGGTTCCACGCGGAGGATTTCTTACCGAGGGCCGGTAAAGTG ATTGACTGGCTGACCGGATCGACGGCGAGATGGCAGAAGACGTTTAAGAAACTCGACAATTACTTCGAGAAGGTGATCGCTATACACCAAGACCCTAACA GGAAGAAGCCTGAGCATGAGGATGTTGTTGATGTTTTGGTTGGGCTCATGAAGGACCAGACGGCGTCGTTTCAGATCACCAAAGACCATCTCAAGGCTGT TCTCATGAACTTGTTTGTGGGGGCGATCGACACAAGCGCAGTGACGGTAGGATGGGCATTCTCGGAGCTGATAAGGAACCCGAGGGTCATGAAGAAAGCG CAGGAGGAGGTGAGAGCCGTGGTCGGACCAAACCAGCACAGAGCGGAAGGTGCCGACCTCGACAAGTTCAAGTACCTAGAGCTCATCCTCAAGGAGACAT TCCGAAAGCACTCGCCGACCCCGCTTGGTGTCCCGCACTTCTGCATGAAACGCTGCAAGGTCGGGGGCTACGACATCCTCCCGGGGACCCAAATCATCGT CAACAACTACTCCCTTGGGCGCGACCCGAAGACTTGGGTGGACCCGGAATCGTTCTACCCAGAACGGTTCGAAGGGAGCAACATAGACTACAGAGGGTCC CACTTTGAGCTGATCCCGTTCGGGGCAGGGCGCAGGATCTGTCCCGGACTGGCAATGGGGACCACAGCCGTGAAGTACATGTTGGCGAACTTGTTGTACC ATTTCGACTACGAGCTCCCCAACGGGATGAAGCCCGAGGAGTTCAAGTTGGTGCCCGCCGGTGGGCTTACCATTCACAACACGAATGAGCTTATCCTCAT CCCTAAGACCCATGTCTTCTGA
AA sequence Show only first row Show all	>Lus10023140 pacid=23170356 polypeptide=Lus10023140 locus=Lus10023140.g ID=Lus10023140.BGIv1.0 annot-version=v1.0 MKLPPGPPPLPVIGNLHQLGSCLYKSFDDLSKKYGPVTFLRLGHAPTVVISSSECAREVMKDNDLECCSRPLAAGAKLLSYNYLDVAFSPYSDYWREMRK LFIFELLSMKRVHTFWYAREEHVDKMVGRMKEAAARGDTVNVSKLVFNLTDGIIGTVAFGRMYAQEEFQEGFVKVGVLEEAMDMLNGFHAEDFLPRAGKV IDWLTGSTARWQKTFKKLDNYFEKVIAIHQDPNRKKPEHEDVVDVLVGLMKDQTASFQITKDHLKAVLMNLFVGAIDTSAVTVGWAFSELIRNPRVMKKA QEEVRAVVGPNQHRAEGADLDKFKYLELILKETFRKHSPTPLGVPHFCMKRCKVGGYDILPGTQIIVNNYSLGRDPKTWVDPESFYPERFEGSNIDYRGS HFELIPFGAGRRICPGLAMGTTAVKYMLANLLYHFDYELPNGMKPEEFKLVPAGGLTIHNTNELILIPKTHVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10023140 [exp]	0	1
AT5G05260		CYP79A2	cytochrome p450 79a2 (.1)		Lus10000627 [exp]	1.7	0.9160
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023144 [exp]	2.4	0.9137
AT2G38860		YLS5	Class I glutamine amidotransfe...		Lus10014721 [exp]	2.8	0.8695
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10011499 [exp]	3.0	0.9009
AT1G06475			unknown protein		Lus10015269 [exp]	9.2	0.8331
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031266 [exp]	15.7	0.8148
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	16.1	0.8272
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	18.2	0.8296
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10036710 [exp]	19.1	0.7949
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10000632 [exp]	20.7	0.8015

Compare expression of checked genes

Lus10023140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.