Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39950 343 / 2e-115 CYP79B2 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) AT2G22330 337 / 4e-113 CYP79B3 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) AT5G05260 326 / 6e-109 CYP79A2 cytochrome p450 79a2 (.1) AT1G16400 300 / 1e-98 CYP79F2 "cytochrome P450, family 79, subfamily F, polypeptide 2", cytochrome P450, family 79, subfamily F, polypeptide 2 (.1) AT1G16410 298 / 6e-98 SPS1, BUS1, CYP79F1 SUPERSHOOT 1, BUSHY 1, cytochrome p450 79f1 (.1.2) AT1G79370 291 / 4e-95 CYP79C1 "cytochrome P450, family 79, subfamily C, polypeptide 1", cytochrome P450, family 79, subfamily C, polypeptide 1 (.1) AT1G58260 288 / 3e-94 CYP79C3P, CYP79C2 cytochrome p450 79c2 (.1) AT5G35917 238 / 3e-75 CYP79A3P "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) AT1G01280 200 / 2e-60 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G35920 168 / 4e-52 CYP79A4P "cytochrome P450, family 79, subfamily A, polypeptide 4 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 4 pseudogene (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023143 [exp] 523 / 0 AT4G39950 605 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023144 [exp] 495 / 6e-175 AT4G39950 604 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031145 [exp] 449 / 2e-157 AT4G39950 561 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031726 [exp] 447 / 3e-156 AT4G39950 573 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031151 [exp] 437 / 5e-152 AT4G39950 603 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10026341 [exp] 411 / 3e-142 AT4G39950 563 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031727 [exp] 245 / 3e-79 AT5G35917 216 / 2e-65 "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) Lus10042319 [exp] 199 / 2e-64 AT2G22330 162 / 4e-48 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) Lus10012624 [exp] 197 / 5e-59 AT1G01280 769 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157400 [exp] 363 / 1e-123 AT4G39950 556 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157200 [exp] 363 / 2e-123 AT4G39950 580 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.004G055200 [exp] 359 / 8e-122 AT4G39950 590 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.002G171800 [exp] 205 / 2e-62 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.005G045800 [exp] 178 / 1e-51 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.006G033300 [exp] 173 / 4e-50 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.006G141400 [exp] 173 / 6e-50 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 172 / 6e-50 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 172 / 2e-49 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084700 [exp] 169 / 6e-49 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10023142 pacid=23170324 polypeptide=Lus10023142 locus=Lus10023142.g ID=Lus10023142.BGIv1.0 annot-version=v1.0 ATGAACATCGACGGCCAGGAGAAGTTTGCGAAGGAAGCGAACAAGACGATTAGGGATCTTCAGAATCCGATTATCGACGAGAGGATCCGACAATGGCAGA GTGGCGAAAGGAAAGTGATGGAAGATCTCACCGACGTTCTTATTACCCTTAAGGACGATGACGGAAAGCCTTTGCTCACCCCCGACGAGATCAAGAACCA GACTGCAGAAATAATGATAGCAACGGTGGACAACCCGTCGAACGCGGTGGAGTGGGCAATGGCGGAGCTGATAAAACAGCCTAACCTCCTAGCAAAGGCG ACCGCCGAAATCGACCGAGTGGTCGGTAAAGATAGGCTAGTCCAAGAATCCGACATCGGGAGCCTCAACTACGTCAAGGCATGCGCCAGGGAATCCTTCC GCCTCCACCCGATGGCCCCCTTCAACGTCCCGCACGTGGCAATGCAGGACACGGTCGTGGCAGGGTACTTCATCCCCAAGGGCAGCCAGGCCCTACTGAG CCGACACGGGCTGGGCCGTAATCCCAAGGTGTGGGCCGACCCTCTAAGGTACGACCCAGAGCGTCATTTGAACGATGGGGCTGAGGTTGTGCTGACCGAG CACGACCTCAGGTTCATATCATTCAGCACAGGCCGTAGGGGTTGCGTGGCGGCGCTTCTGGGCACGTGCATGACCACCATGCTCTTGGCGAGGCTGCTCC AGTGCTTTTCGTGGGCCCCGCCTGGGAATGCGAAGTCGATTGATTTGACGGAGCTGCCGGATGAGCTCATCATGGCGTCGCCGCTGACGGCTGCCGCCAC GCCGCGCTGCCGCTACGCCGCGTTTGGCTGCCCACTTCTACCCCAAGATTACCAACTGATCATCCATGGCCGGTGTTTTGAGAGAGAAAAATAA
AA sequence Show only first row Show all	>Lus10023142 pacid=23170324 polypeptide=Lus10023142 locus=Lus10023142.g ID=Lus10023142.BGIv1.0 annot-version=v1.0 MNIDGQEKFAKEANKTIRDLQNPIIDERIRQWQSGERKVMEDLTDVLITLKDDDGKPLLTPDEIKNQTAEIMIATVDNPSNAVEWAMAELIKQPNLLAKA TAEIDRVVGKDRLVQESDIGSLNYVKACARESFRLHPMAPFNVPHVAMQDTVVAGYFIPKGSQALLSRHGLGRNPKVWADPLRYDPERHLNDGAEVVLTE HDLRFISFSTGRRGCVAALLGTCMTTMLLARLLQCFSWAPPGNAKSIDLTELPDELIMASPLTAAATPRCRYAAFGCPLLPQDYQLIIHGRCFEREK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023142 [exp]	0	1
AT5G05260		CYP79A2	cytochrome p450 79a2 (.1)		Lus10023141 [exp]	1.4	0.9458
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023143 [exp]	2.0	0.9154
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10010111 [exp]	7.7	0.7833
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037013 [exp]	22.3	0.7834
AT5G28150			Plant protein of unknown funct...		Lus10042600 [exp]	23.7	0.7373
AT1G70780			unknown protein		Lus10035084 [exp]	24.4	0.7318
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10005592 [exp]	36.6	0.6972
					Lus10025227 [exp]	40.0	0.7564
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10010066 [exp]	41.1	0.7432
AT5G46720			AIG2-like (avirulence induced ...		Lus10034712 [exp]	42.2	0.7575

Compare expression of checked genes

Lus10023142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.