Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39950 575 / 0 CYP79B2 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) AT2G22330 561 / 0 CYP79B3 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) AT5G05260 540 / 0 CYP79A2 cytochrome p450 79a2 (.1) AT1G58260 464 / 3e-159 CYP79C3P, CYP79C2 cytochrome p450 79c2 (.1) AT1G79370 445 / 3e-151 CYP79C1 "cytochrome P450, family 79, subfamily C, polypeptide 1", cytochrome P450, family 79, subfamily C, polypeptide 1 (.1) AT5G35917 436 / 8e-149 CYP79A3P "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) AT1G16400 426 / 4e-144 CYP79F2 "cytochrome P450, family 79, subfamily F, polypeptide 2", cytochrome P450, family 79, subfamily F, polypeptide 2 (.1) AT1G16410 426 / 6e-144 SPS1, BUS1, CYP79F1 SUPERSHOOT 1, BUSHY 1, cytochrome p450 79f1 (.1.2) AT1G01280 280 / 7e-88 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G07990 233 / 7e-70 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023144 [exp] 877 / 0 AT4G39950 604 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031726 [exp] 763 / 0 AT4G39950 573 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031145 [exp] 748 / 0 AT4G39950 561 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10026341 [exp] 747 / 0 AT4G39950 563 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031151 [exp] 737 / 0 AT4G39950 603 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023142 [exp] 526 / 0 AT4G39950 345 / 4e-116 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10000239 [exp] 500 / 8e-176 AT2G22330 331 / 7e-110 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) Lus10031727 [exp] 288 / 2e-92 AT5G35917 216 / 2e-65 "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) Lus10012624 [exp] 275 / 2e-85 AT1G01280 769 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157200 [exp] 592 / 0 AT4G39950 580 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157400 [exp] 587 / 0 AT4G39950 556 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.004G055200 [exp] 582 / 0 AT4G39950 590 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.002G171800 [exp] 286 / 4e-90 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.007G084200 [exp] 239 / 2e-72 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084800 [exp] 234 / 2e-70 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 235 / 5e-70 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084700 [exp] 232 / 9e-70 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G082900 [exp] 232 / 1e-69 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 231 / 2e-69 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10023143 pacid=23170315 polypeptide=Lus10023143 locus=Lus10023143.g ID=Lus10023143.BGIv1.0 annot-version=v1.0 ATGAAAACCTCCGACGCTAGCCTATCCACCACCGGCACAATGACATCTACCACCTCCATCGCCCTCCTCCTCGCCCTTCTCGTTTCCTTCATAAGCTATC TCAACCTCAAAAAACGATCCTCGATGGGTGCTGATGATCACGACGCCTCAGGAGGAAGAGCAGGTAGGCTTATTGCAGCCAAGAAGATCAAGCCGGTGCT ACCTCCAAGCCCACCATCGTGGCCGGTGATCGGGAACATTCCAGAGCTTATCACGAAAAAGCCGTGGTTCCGGTGGGTGCACCAGTTGATGAAGGAGATG AACACAGACATCTGCATGATCCGCCTGGGCAGGTTCAACCTAATACCCGTATTGGACCCTGCCATTGCTAGGGAGTTCCTGAAGAAGCAGGACGCCATCT TCGCGGACCGACCCCACCAGGTGGGCAGCCATGCCATGAGCGGAGGCTACATGACCACGATAGCCACGCCTTACAACGACCAGTGGCGCAAGATGAGGAA GGTGATGACCTCAGAGATCGTCTCCCCGGCCCGTCTCAAGTGGCTCCACCAGAAGCGTGTCGAGGAGGCCGATAACCTGGTGTTCTACGTCCACAACCTC AGCAGGGCTGGCAAGAGCGTCGACCTGAGGGTGGCCACCCAACATTACTGCGGGAACGTGATAAGGAAGATGATGTTCAGCAGGAGGTTCTTCGGCGAGC AAACCCTCGACGGTGGGCCCGGTCCTAAGGAGGTCGAGCACGTGAAAGCGATATTCCTCGCGTTGAAGTACGTGTATTCGTTCTGCTTGTCGGATTACGT GCCGTTCCTCAGAGGGATGAACATCGACGGCCAGGAGAAGTTTGCGAAGGAAGCGAACAAGACGATTAGGGATCTTCAGAATCCGATTATCGACGAGAGG ATCCGACAATGGCAGAGTGGCGAAAGGAAAGTGATGGAAGATCTCACCGATGTTCTTATTACTATTAAGGACAAAGACGGGAAGTCTTTGCTCACTCCTG ACGAGATAAAAAACCAAACTGCGGAAATAATGATAGCAACGGTAGACAACCCGTCGAACGCGGTGGAATGGGCAATGGCAGAGCTGATAAACCAACCCGA TCTCCTGAAAAAGGCAACGGCCGAAATTGACTTGGTGGTCGGTAAAGACCGACTAGTCCAAGAATCCGACATCGGGAGCCTCAACTATGTCAAGGCATGC TCCAGGGAAGCCTTTCGCCTCCACCCAATGGCCCCGTTCAACGTCCCACACGTGGCAATGCAAGACACGGTGGTTGCCGGCTACTTCATCCCGAAGGGCA GTCAGGCCCTGCTGTCCCGATACGGGCTAGGCCGAAACCCCAAAGTGTGGGCCGACCCTCTCAAATATGACCCCGAGCGTCACATGAACGACGGGACCGA GGTCGTGCTGACAGAGCACGAGCTCAGGTTCATATCTTTCAGCACGGGCCGCAGGGGTTGCGTGGCGCCCTTACTGGGCACGTGCATGACCACCATGCTC CTCGCTAGGCTGCTCCAATGCTTTTCGTGGGCGCCGCCGCGGAATGCAAAGTCGATTGATTTGACGGAGCTGCCGGATGAGCTCATCATGGCGTCGCCAC TCACGGCTAACGCCACGCCGCGTTTGGCTGCTCACTTGTACCCTTTGGTTACCAACTGA
AA sequence Show only first row Show all	>Lus10023143 pacid=23170315 polypeptide=Lus10023143 locus=Lus10023143.g ID=Lus10023143.BGIv1.0 annot-version=v1.0 MKTSDASLSTTGTMTSTTSIALLLALLVSFISYLNLKKRSSMGADDHDASGGRAGRLIAAKKIKPVLPPSPPSWPVIGNIPELITKKPWFRWVHQLMKEM NTDICMIRLGRFNLIPVLDPAIAREFLKKQDAIFADRPHQVGSHAMSGGYMTTIATPYNDQWRKMRKVMTSEIVSPARLKWLHQKRVEEADNLVFYVHNL SRAGKSVDLRVATQHYCGNVIRKMMFSRRFFGEQTLDGGPGPKEVEHVKAIFLALKYVYSFCLSDYVPFLRGMNIDGQEKFAKEANKTIRDLQNPIIDER IRQWQSGERKVMEDLTDVLITIKDKDGKSLLTPDEIKNQTAEIMIATVDNPSNAVEWAMAELINQPDLLKKATAEIDLVVGKDRLVQESDIGSLNYVKAC SREAFRLHPMAPFNVPHVAMQDTVVAGYFIPKGSQALLSRYGLGRNPKVWADPLKYDPERHMNDGTEVVLTEHELRFISFSTGRRGCVAPLLGTCMTTML LARLLQCFSWAPPRNAKSIDLTELPDELIMASPLTANATPRLAAHLYPLVTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023143 [exp]	0	1
AT5G05260		CYP79A2	cytochrome p450 79a2 (.1)		Lus10023141 [exp]	1.0	0.9586
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023142 [exp]	2.0	0.9154
AT3G13480			unknown protein		Lus10010318 [exp]	8.8	0.7536
AT5G28150			Plant protein of unknown funct...		Lus10042600 [exp]	9.9	0.7493
					Lus10002646 [exp]	13.2	0.7072
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10027148 [exp]	18.2	0.7806
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037013 [exp]	19.6	0.7820
AT1G45688			unknown protein		Lus10035869 [exp]	19.9	0.7056
AT2G34585			unknown protein		Lus10038503 [exp]	21.1	0.7387
AT1G70780			unknown protein		Lus10035084 [exp]	21.5	0.7252

Compare expression of checked genes

Lus10023143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.