Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10290 614 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65240 589 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63710 500 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) AT1G71830 473 / 2e-163 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 463 / 3e-159 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 448 / 1e-153 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 424 / 4e-144 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT3G25560 412 / 2e-139 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G13800 407 / 1e-137 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT1G60800 399 / 3e-134 NIK3 NSP-interacting kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000629 [exp] 726 / 0 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10006057 [exp] 476 / 4e-165 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028716 [exp] 474 / 5e-164 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10020962 [exp] 446 / 5e-153 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10030898 [exp] 412 / 2e-139 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 411 / 8e-139 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 407 / 2e-137 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10006056 [exp] 404 / 1e-136 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10019145 [exp] 403 / 1e-135 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094500 [exp] 648 / 0 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G074200 [exp] 641 / 0 AT5G10290 855 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G001800 [exp] 498 / 5e-173 AT5G63710 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G306000 [exp] 491 / 2e-170 AT5G63710 791 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G087700 [exp] 471 / 3e-162 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.013G117200 [exp] 470 / 4e-162 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 468 / 2e-161 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 464 / 1e-159 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.003G023000 [exp] 450 / 2e-154 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.001G206700 [exp] 445 / 2e-152 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023146 pacid=23170423 polypeptide=Lus10023146 locus=Lus10023146.g ID=Lus10023146.BGIv1.0 annot-version=v1.0 ATGGAGCTTTTTCTTACAGCTTTTGTACTGGCTGGGTTGTTTTCCAGCGCCTTCTCGGATTTGCAAGGAGCTTCCCATAAGTCAAAAGTTGGAGTTATTG TTGGAGTCGTTGGAGGACTTGCAAGTATCCTCTTTGCAGGAGGCTTGATTTACTTGGTGTGCAAGTTTAGAAACAGACGCTTCAAACATGAAGTCTTTGT AGATGTGGCAGGTGAAGTGGACCGACGAATTGCGTTTGGTCAATTGAAGCGATTCTCATGGAGGGAGTTACAGCTGGCCACCGACAACTTCAACGAGAAG CATATTCTCGGACAGGGAGGTTTCGGAAAAGTCTACAAAGGAGTGCTTCCCGATGGTACGAAAATCGCTGTGAAACGTTTGACTGATTTCGAGAGTCCGG GAGGAGACGCTGCTTTCCAACGTGAAGTTGAGATGATAAGCGTAGCTGTCCATAGAAACCTGCTGAGACTAATTGGGTTTTGCACTACGCCAACCGAACG CCTGCTCGTGTATCCGTTTATGCAGAATTTGAGCGTAGCTTATCGTCTACGAGAGCGTAAACCCGAGGAGCCCGTACTAGACTGGGAAACGAGGAAAAGA GTCGCGCTAGGTGCAGCACGGGGTTTGGAATACCTTCACGAACATTGTAACCCGAAAATAATACATCGTGATGTGAAAGCAGCTAACGTGTTATTGGATG AGGATTATGAAGCGGTAGTTGGTGATTTCGGCCTTGCAAAGCTGGTCGATGTTAGGAAGACGAACGTTACAACTCAAGTTCGCGGCACAATGGGCCACAT AGCTCCCGAATACTTATCGACAGGGAAGTCATCCGAAAGGACAGATGTTTTCGGCTATGGCATCTTGCTTCTCGAGGTTGTAACAGGGCAGCGCGCAATC GATTTCTCTCGCCTTGAAGAAGAGGACGATGTCTTGCTTCTTGATCACGTGAAGAAGCTAGAGCGGGAGAAGAGGTTGGATGCGATCGTGGACCGCAACT TGAAGAAGAACTACAACATGGTGGAAGTGGAAATGATGATCCAGGTAGCGCTACTGTGCACGCAGGCCTCACCGGAAGATCGGCCAGCAATGTCGGAGGT CGTAAGGATGCTGGAAGGCGAAGGGCTAGCTGAGAGATGGGAGGAATGGCAGCATGTGGAAGTGAATCGCAGGGAAGAGTACGAAAGGCAGCAGAGGAGG TTCGACTGGGGAGAAGATTCGTTCTACAACCAGGACGCTATCGAGCTATCCGGTGCAAGATGA
AA sequence Show only first row Show all	>Lus10023146 pacid=23170423 polypeptide=Lus10023146 locus=Lus10023146.g ID=Lus10023146.BGIv1.0 annot-version=v1.0 MELFLTAFVLAGLFSSAFSDLQGASHKSKVGVIVGVVGGLASILFAGGLIYLVCKFRNRRFKHEVFVDVAGEVDRRIAFGQLKRFSWRELQLATDNFNEK HILGQGGFGKVYKGVLPDGTKIAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRERKPEEPVLDWETRKR VALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDYEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGILLLEVVTGQRAI DFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLKKNYNMVEVEMMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVNRREEYERQQRR FDWGEDSFYNQDAIELSGAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10290			leucine-rich repeat transmembr...		Lus10023146 [exp]	0	1
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	3.2	0.7973
AT1G16240		ATSYP51, SYP51	syntaxin of plants 51 (.1.2.3)		Lus10002446 [exp]	7.7	0.7912
AT2G07180			Protein kinase superfamily pro...		Lus10040588 [exp]	8.8	0.7536
AT1G29760			Putative adipose-regulatory pr...		Lus10007323 [exp]	8.9	0.7866
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Lus10011138 [exp]	10.9	0.7922
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10015676 [exp]	11.0	0.7564
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10009553 [exp]	14.7	0.7908
AT5G52430			hydroxyproline-rich glycoprote...		Lus10039253 [exp]	14.8	0.7439
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10008953 [exp]	16.6	0.7766
AT4G36660			Protein of unknown function (D...		Lus10007156 [exp]	17.1	0.7428

Compare expression of checked genes

Lus10023146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.