Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 397 / 2e-139 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 295 / 2e-99 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 193 / 1e-59 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 171 / 4e-51 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 169 / 4e-50 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 164 / 2e-48 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 164 / 7e-48 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 147 / 9e-42 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 66 / 4e-12 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000630 [exp] 573 / 0 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 319 / 2e-108 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 257 / 6e-86 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 208 / 5e-65 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 201 / 1e-62 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 189 / 2e-57 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 180 / 1e-54 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 142 / 9e-40 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 117 / 1e-30 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G074066 [exp] 451 / 8e-161 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 449 / 5e-160 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 403 / 1e-141 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G097400 [exp] 385 / 1e-134 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 197 / 4e-61 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 196 / 2e-60 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 155 / 4e-45 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 155 / 5e-45 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 149 / 2e-42 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 147 / 7e-42 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10023147 pacid=23170333 polypeptide=Lus10023147 locus=Lus10023147.g ID=Lus10023147.BGIv1.0 annot-version=v1.0 ATGGCGAAATGCTTCAGCTACACAGCAACCCAAGACTCCTGCTTCCGCTACTCCTTCTCCAGAGCCGGCTTAAAATCCTCCACCACCGATCTCGACGGCG GCGGAACAACAATCATGCACTGCTGGGAACCCAAATCCCCCTCCAAATCGAAGCCCAATCTAGTCCTGATCCACGGATTCGGCGCCAACGCAATGTGGCA GTTCAACGACTTCATCTCCCCATTGAAATCCAAGTTCAATCTCTACATCCCGGACCTCCTCTTCTTCGGCGACTCCCACACGACCCGACCCGACCGGTCG GAATCCTTTCAGGCCCGCTGCGTCGCCGCGCTAATGGCGGCCCATGGCGTCCTAAGGATGGACCTTATGGGGCTCAGCTACGGCGGGTTTGTCGCGTACA GCTTGGCGGCGCAGTTCCCCGAGCGCGTGGGGCGAGTGGTTCTGGGGTGCGCTGGGGTTTGTCTTGAGGAGAAAGATATGGAGGATGGGATGTTTCAGGT GAAGAGTGTTGATGAAGCTGTAGGGATTCTGCTACCGCAGACGCCGGAGAAGTGCCGGCAGTTGCTCCGGCTGTCGTTTTATAAGCCTCCGCCGGTGGCC CCTTCTTGTTTCCTCAGCGATTTCATTGAGGTAATGTGTACAGAATACCTTCAAGAAAGGAGGGAGTTGATAGAGACACTTCACAGAGATAGGAAACTGT CCTCACTCCCCCGTATAACCCAGCCTACGCTTATAGTATGGGGAGAATACGACCAAGTATTCCCAGTGGCATTGGCACACAGATTAAAAAGCCATATTGG GGAGAATGCAGAGCTGGTGATACTAAAGAATGCAGGGCATGCACTGAATGCAGAGCGGCCTAAACAGCTCTATAAGCACATCAAGTCCTTCCTCCTTCAA ACTACACCTCCTCCTTCGACTAAGCAACCACACCACAGCAACGGTGTCAAGACTGATTGA
AA sequence Show only first row Show all	>Lus10023147 pacid=23170333 polypeptide=Lus10023147 locus=Lus10023147.g ID=Lus10023147.BGIv1.0 annot-version=v1.0 MAKCFSYTATQDSCFRYSFSRAGLKSSTTDLDGGGTTIMHCWEPKSPSKSKPNLVLIHGFGANAMWQFNDFISPLKSKFNLYIPDLLFFGDSHTTRPDRS ESFQARCVAALMAAHGVLRMDLMGLSYGGFVAYSLAAQFPERVGRVVLGCAGVCLEEKDMEDGMFQVKSVDEAVGILLPQTPEKCRQLLRLSFYKPPPVA PSCFLSDFIEVMCTEYLQERRELIETLHRDRKLSSLPRITQPTLIVWGEYDQVFPVALAHRLKSHIGENAELVILKNAGHALNAERPKQLYKHIKSFLLQ TTPPPSTKQPHHSNGVKTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10023147 [exp]	0	1
AT5G57710			Double Clp-N motif-containing ...		Lus10008902 [exp]	3.5	0.6920
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	7.5	0.7092
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036526 [exp]	10.5	0.6686
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10029622 [exp]	16.2	0.7088
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	16.5	0.7044
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10000555 [exp]	20.4	0.6660
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	27.7	0.6648
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	27.7	0.6961
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	30.7	0.6759
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10015371 [exp]	32.8	0.6484

Compare expression of checked genes

Lus10023147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.