Plant FIBer expression Database

Lus10023150 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22370 291 / 3e-100 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000634
[exp]
258 / 3e-83 AT5G10320 300 / 2e-97 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G095300
[exp]
291 / 3e-100 AT2G22370 359 / 1e-127 unknown protein
PFAM info
Representative CDS sequence
>Lus10023150 pacid=23170293 polypeptide=Lus10023150 locus=Lus10023150.g ID=Lus10023150.BGIv1.0 annot-version=v1.0
ATGCCACGACAGACAGAGATTTCCAAACCCCGCGTCTTAGCTAGGTTTAGTCTTCGCTTTCTCTTGCCGGATCTCATCGACCGCCTTCAGCCGTTGTTGT
CGGCCCCCGGCGGCCACCCTCACGTGGAGGCCCTGGAGATACTTCTTCAAGGTCTTTGTGGTGTTCATAGAGAACCCTTGAATGTCCATGAGCTATGCCT
GAAAAGTGCTCCTATGCTTGGTGAGTTTGGCTCAGCTTTGTTCGCAAGTTTCTTATACATGCCGTGTTTAAGCTGGATCTGGAAGACTCTGGAACTGACC
GTGAAACATATTGGCGGTGCAATGAGAGGAGCTGGTGCTGATCAGATTTCTGTCCTTGTAAGGAGTATGGTTGAAAGCAAAGCTAGCAAAAATGTGCTCC
GTCTATTTTATGCCCTTGGTTATAAGCTGGAGAATGAGTTACTAAGGATTGGATTTTCCTTCCATTTCCAAAGGGGTGCTCAAATAACTGTCACTGTGTC
ATCCATCAGCAAGATGCAGAAATTGCACGCCATTGATGATGCTGTGGCTGTAACTCCTGGGATCCAGCTTGTCGCAGTAACAGCCCCTGCAACCCCAGAG
AATTATTCTGACGTTGTTTCTGCAGTCTCCTCCTTTTGTGAATATCTTGCACCGCTCCTGCATTTATCAAAGCCAGGTATTTCAACTGGTGTTGTTCCTA
CTGCTGCGGCTGCTGCAGCATCACTCATGTCCGATGGTGGAGGCACAACTTTGTAG
AA sequence
>Lus10023150 pacid=23170293 polypeptide=Lus10023150 locus=Lus10023150.g ID=Lus10023150.BGIv1.0 annot-version=v1.0
MPRQTEISKPRVLARFSLRFLLPDLIDRLQPLLSAPGGHPHVEALEILLQGLCGVHREPLNVHELCLKSAPMLGEFGSALFASFLYMPCLSWIWKTLELT
VKHIGGAMRGAGADQISVLVRSMVESKASKNVLRLFYALGYKLENELLRIGFSFHFQRGAQITVTVSSISKMQKLHAIDDAVAVTPGIQLVAVTAPATPE
NYSDVVSAVSSFCEYLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGGTTL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G22370 unknown protein Lus10023150
[exp]
0 1
AT5G66320 GATA GATA5 GATA transcription factor 5 (.... Lus10028360
[exp]
2.2 0.8482
AT3G56850 bZIP DPBF3, AREB3 ABA-responsive element binding... Lus10008928
[exp]
6.7 0.8194
AT5G62090 SLK2 SEUSS-like 2 (.1.2) Lus10015002
[exp]
8.5 0.8255
AT5G25510 Protein phosphatase 2A regulat... Lus10013141
[exp]
8.6 0.8377
AT5G66730 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDR... Lus10007168
[exp]
10.0 0.7785
AT4G02100 Heat shock protein DnaJ with t... Lus10002438
[exp]
11.7 0.7927
AT1G69440 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute f... Lus10037136
[exp]
12.0 0.8118
AT1G75590 SAUR-like auxin-responsive pro... Lus10007552
[exp]
13.4 0.7849
AT1G53800 unknown protein Lus10037460
[exp]
13.5 0.7977
AT2G16390 DMS1, CHR35, DR... DEFECTIVE IN RNA-DIRECTED DNA ... Lus10042070
[exp]
13.9 0.7934

Lus10023150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.