Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65250 174 / 1e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000635 [exp] 482 / 3e-173 AT5G65250 207 / 2e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G095600 [exp] 198 / 9e-62 AT5G65250 162 / 7e-48 unknown protein Potri.005G073500 [exp] 197 / 3e-61 AT5G65250 122 / 1e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023151 pacid=23170361 polypeptide=Lus10023151 locus=Lus10023151.g ID=Lus10023151.BGIv1.0 annot-version=v1.0 ATGTTGCTCACCTCTCAACGCCTCTTCCTCACCTCACCTCCCCAATTCACAACCCTCCACCACCACACTAACACCAATCTCCAGCCTACTCTCGGCAGTT CCTCCTACAAACCCCACCACCCGCCGCTGCTTTGGAGCTCCACGGTCAAGCTCCGAACTCCTCTCATTCCTCGAGCATACGGATCCGACGCCATCCTAAC CACGCCACCAACAGTAGTAGACGGTGTAACACTCGATGCTGTCCTGGCAGTTGCGGAGTTCCTATGCATCTTTTCCTCGGCAATCATCACGGTCAGCTAC GCGGTGAACTGTACGGTTCCGAGCTGTGGGAAGACGGCGGTGGTGTTGAGCGTGATCGGTAGCAATGGGGCGTTCGCTTGGGGGATGGCGGTGATGCTGG CCGGTGTTGTGCTAGGCGGATGGGTGAGGCGGCGGCAGTGGAGAAGGATCTGTAGGGTTGAGAAAGGTGCCGAGAGTGTGAATTTGATCGATAGGATTGA GAAATTGGAAGAGGATTTGAAGAACTCTGTTGCGATTGTGCGGGTTTTGGCGAGGCAGCTTGAGAAGTTAGGGATCCGGTTTCGGCTTACCAGGAAAGCC TTGAAAGAACCTATAGCTGAGACTGCAGCTTTGGCTCAGAAGAATTCGGAGGCAACCCGTGTATTAGCTATGCAAGAAAGCAATCTAGAGAAGGAGCTTG CTGAAATCCAGAAGCTTCTCTTTGCAATGCAGGAGCAGCAACAGAAGCAGCTAGATCTGATCCTGGCAGTTGCCAAGTCTGGGAAGCTATGGGAATCCAA GCAAGAACATAGCCCCCCACAAGAAACGACGAAAACATCAGAACCAAAACACTCGGAAACCCGCAAGCCTCGACCATCACCTGCAAGCATGGGATCCAAC AATGAGAAATTGTAG
AA sequence Show only first row Show all	>Lus10023151 pacid=23170361 polypeptide=Lus10023151 locus=Lus10023151.g ID=Lus10023151.BGIv1.0 annot-version=v1.0 MLLTSQRLFLTSPPQFTTLHHHTNTNLQPTLGSSSYKPHHPPLLWSSTVKLRTPLIPRAYGSDAILTTPPTVVDGVTLDAVLAVAEFLCIFSSAIITVSY AVNCTVPSCGKTAVVLSVIGSNGAFAWGMAVMLAGVVLGGWVRRRQWRRICRVEKGAESVNLIDRIEKLEEDLKNSVAIVRVLARQLEKLGIRFRLTRKA LKEPIAETAALAQKNSEATRVLAMQESNLEKELAEIQKLLFAMQEQQQKQLDLILAVAKSGKLWESKQEHSPPQETTKTSEPKHSETRKPRPSPASMGSN NEKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65250			unknown protein		Lus10023151 [exp]	0	1
AT5G65250			unknown protein		Lus10000635 [exp]	1.7	0.8718
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022046 [exp]	2.0	0.8517
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	7.7	0.8494
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	10.1	0.8330
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10035751 [exp]	10.4	0.8371
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	12.0	0.8350
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10001522 [exp]	12.4	0.8281
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031409 [exp]	16.1	0.7983
AT3G52610			unknown protein		Lus10014214 [exp]	18.7	0.7583
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	21.4	0.8195

Compare expression of checked genes

Lus10023151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.