Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39980 844 / 0 DHS1 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) AT1G22410 837 / 0 Class-II DAHP synthetase family protein (.1) AT4G33510 815 / 0 DHS2 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000636 [exp] 1032 / 0 AT4G39980 860 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10025739 [exp] 894 / 0 AT4G39980 848 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10035923 [exp] 868 / 0 AT1G22410 840 / 0.0 Class-II DAHP synthetase family protein (.1) Lus10001002 [exp] 776 / 0 AT4G33510 818 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) Lus10011022 [exp] 635 / 0 AT4G33510 658 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073300 [exp] 892 / 0 AT4G39980 891 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.005G162800 [exp] 880 / 0 AT1G22410 869 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.002G099200 [exp] 871 / 0 AT1G22410 845 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.007G095700 [exp] 816 / 0 AT4G39980 796 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.001G150500 [exp] 791 / 0 AT4G33510 819 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01474 [flax] [poplar] DAHP_synth_2 Class-II DAHP synthetase family
Representative CDS sequence Show only first row Show all	>Lus10023152 pacid=23170443 polypeptide=Lus10023152 locus=Lus10023152.g ID=Lus10023152.BGIv1.0 annot-version=v1.0 ATGGCGCTTTCCACTCTATCCTCCACCTCCATCAACCCCTCCTGCTCTTCACATTCCCTCACCACCCATCTCCACCAGACCCCCAAACCCAATTTCCCCT CCTGGAACCCTCACCCCACTTCCAGATCCACTCTCCGTTCGATCTCCGCAGTCCACGCCGCCGAGCCCACCAAACTCCCCGTCAAGCAATCCCCCCCTCC TTCCACCGCATCCTCCGGGAAATGGACTGTCGACAGCTGGAAGACGAAGAAGGCATTGCAGCTCCCCGAGTACCCGGACGCCGCCGATCTCGACGACGTA TTGAAGACGATCGAGGAGTTCCCTCCGTTGGTTTTCGCTGGGGAAGCGAGGAGCCTCGAGGAGAAGCTAGGGGAAGCTGCCGTTGGGAAGGCGTTCTTGT TGCAAGGTGGGGATTGTGCTGAGAGTTTCAAGGAGTTTAATGCTAATAACATCAGGGATACCTTCAGGATCTTGCTTCAGATGGGTGCTGTTCTCATGTT CGGCGGCCAAATGCCTGTGATTAAGAAGCGTGGGGAATCTGGAACAGTGTCTTGGATTGCAAGTAACCCTTTTAAGGTGGGTAGAATGGCTGGCCAATTT GCTAAGCCAAGGTCAGATGCATATGAAGAGAAGGATGGGAAGAAGCTTCCTAGCTACAAGGGAGACAATATCAACGGTGATGCTTTCACCGAAAAGTCGA GGATTCCAGATCCACAGAGGATGATCAGAGCTTATTGCCAATCCGCCGCTACTCTCAACCTTCTTAGGGCCTTTGCCACTGGTGGATATGCCGCCATGCA AAGGGTCACCCACTGGAACCTCGATTTCGCTGAGCACAGCGAGCAGGGAGATAGGTATCAAGAGTTGGCGAATAGGGTTGATGAGGCCTTAGGGTTCATG GCTGCTGCTGGATTGACGGTGGATCATCCCATCATGACAACCACTGAATTCTGGACTTCTCATGAGTGTTTACTTTTGCCGTATGAGCAATCTCTCACGA GGTTGGATTCGACGTCTGGTTTGTACTATGATTGCTCGGCTCACATGCTGTGGTGCGGTGAACGAACTCGTCAGCTTGATGGTGCACACGTGGAGTTCCT TCGAGGAATCTCCAATCCTCTAGGAATCAAGGTAAGCCAGAAAATGGACCCGACTGAGTTGGTGAAACTGATTGAGATCTTGAACCCTGCCAACAAGCCG GGGAGGATAACAATCATCTGCAGAATGGGGGCTGAAAACATGAGAGTCAAGCTTCCTCACTTGATCAGAGCTGTACGAAGATCCGGACAAATTGTTACAT GGGTCTCCGATCCAATGCACGGGAACACTATCAAGGCACCTTGTGGTCTCAAAACGCGCCCCTTCGATAATATCCTGGCTGAAGTGCGTGCATTCTTCGA TGTCCACGAGCAAGAAGGAAGCAACCCAGGAGGAATTCACCTCGAGATGACCGGGCAGAACGTGACCGAATGCATCGGAGGGTCACGAACAGTAACGTTT GACGACCTGAGCTCTCGCTACCACACACACTGCGACCCTAGGCTGAACGCGTCGCAAGCACTGGAGCTATCTTTCATCATTGCAGAGCGGCTCAGAAAGA AGAGGATAGGAAACAAAGGTTTCCTCAAAGTGTAA
AA sequence Show only first row Show all	>Lus10023152 pacid=23170443 polypeptide=Lus10023152 locus=Lus10023152.g ID=Lus10023152.BGIv1.0 annot-version=v1.0 MALSTLSSTSINPSCSSHSLTTHLHQTPKPNFPSWNPHPTSRSTLRSISAVHAAEPTKLPVKQSPPPSTASSGKWTVDSWKTKKALQLPEYPDAADLDDV LKTIEEFPPLVFAGEARSLEEKLGEAAVGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKKRGESGTVSWIASNPFKVGRMAGQF AKPRSDAYEEKDGKKLPSYKGDNINGDAFTEKSRIPDPQRMIRAYCQSAATLNLLRAFATGGYAAMQRVTHWNLDFAEHSEQGDRYQELANRVDEALGFM AAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWCGERTRQLDGAHVEFLRGISNPLGIKVSQKMDPTELVKLIEILNPANKP GRITIICRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDNILAEVRAFFDVHEQEGSNPGGIHLEMTGQNVTECIGGSRTVTF DDLSSRYHTHCDPRLNASQALELSFIIAERLRKKRIGNKGFLKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10023152 [exp]	0	1
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	1.7	0.9844
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10033672 [exp]	2.8	0.9793
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	3.9	0.9805
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	4.9	0.9818
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	7.7	0.9778
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	8.1	0.9733
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	9.5	0.9775
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	9.9	0.9710
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	9.9	0.9759
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020832 [exp]	11.2	0.9636

Compare expression of checked genes

Lus10023152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.