Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17840 566 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 535 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 517 / 1e-175 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 484 / 9e-163 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT2G28070 369 / 2e-117 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G13610 239 / 2e-69 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G55100 231 / 3e-66 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55110 231 / 5e-66 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT4G25750 224 / 1e-64 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT3G55130 223 / 6e-63 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040644 [exp] 530 / 2e-180 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10027354 [exp] 495 / 1e-166 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 476 / 9e-160 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 471 / 2e-157 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 456 / 5e-152 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 445 / 1e-147 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10018268 [exp] 419 / 7e-140 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10027353 [exp] 403 / 3e-132 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 392 / 2e-127 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073100 [exp] 895 / 0 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 885 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G311300 [exp] 787 / 0 AT1G17840 617 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G312300 [exp] 783 / 0 AT1G17840 624 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051300 [exp] 764 / 0 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051000 [exp] 763 / 0 AT1G17840 596 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G155300 [exp] 595 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 588 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G255800 [exp] 537 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 533 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023154 pacid=23170392 polypeptide=Lus10023154 locus=Lus10023154.g ID=Lus10023154.BGIv1.0 annot-version=v1.0 ATGGATTCAGCCGCCACGCACGATAACAAGGTGCCCACGTGGACGCCTAGTCCGACCAGATCATCATCAATCGCCGTCGACGCCGGCGATCACGTCGCAA TGGTAAAGTTCCCCTTCAGCAGTGATCACGACGGTGGTCGTGATTTGGAGATGGAAATGGATGATCACCAAAATGATGATGATTGGGTGGAGGCGGCGGC AGGGGAGAAGGGAGGAGTTTTCTTGACGTGGAAGGATCTGAGTGTTGTCGTGGTTGCAGCGGCGGCGGAGGTAGGTGGTAATGGTCGCCGGCGGAAGACG ATACTTGAAGGGGTGACGGGTTATGCGGAGGCCGGTGAAGCTCTGGCGATCATGGGTCCTTCTGGGTCCGGGAAGTCAACTCTGCTTGATACGCTGGCAG GGAGACTTGGCTCGAAAACACAACAAACCGGAGAGATTTTAATCAACGGCCGAAAAGAGACTCTAGCCTATGGGACATCGGCATACCTGACGCAAGACGA CACACTGATGACAACACTTACCGTACGCGAAGCCGTTTACTACTCAGCCCAGCTCCAGCTCCCAGACTCGATCCCTCTCGCCGAGAAGAAGCGACGGGCC GACTCGATCATCGCCGAAATGGGGCTGAAGGAGTCGGCCAACACGAGAATCGGAGGCGCCTGGAGCTCCTCGAACAAGGGGCTGAGCGGAGGGCAGAGGA GGAGAGTGAGCATTTGCATCGAAATCCTGAGACGCCCCAAGCTTCTCTTCTTGGACGAGCCCACCAGCGGGCTTGACAGCGCTGCCTCTTACCATGTCAT GAGTAGGATCCTCGGTCTCACTCGCCGCGAGGGGATCACCGTCGTGGCGAGCGTGCACCAGCCCAGTGGCGAGGTTTTCCGCTTGTTTCATAACCTCTGC CTCTTGTCTTCTGGGAGGACCGTCTACTTTGGCCCTGTTTCATTGGCTGAACAGTTCTTCTCATCAAATGGGTTCCCTTGTCCGACGTTCAGAAACCCAT CCGATCACTATCTTCAGACCATCAACAAAGACTTCGATCTGGACATTGAGAAAGCAGATGGTGGCGGTTCGTTCAAAACAGAGGAAGCCATTAGGGTTCT TGTTTCGTCCTACAAATCATCAGCGATTCACCAACAGACTCAACAACATGTTGATTACTTATGCCAACAGAAGAAAAAAGGAGGGTTGGGGAAGAAAGGA GGTGAAGCAAGCATGATGAGTCAAAGCATAGTGCTTACAAAGAGATCCTTTGTGAACATGTATCGTGACCTTGGCTACTATTGGCTTCGCCTAGCGGTCT ACATTGCTCTGTGCTTGTGTGTTGGAACCATATTTTACGACATCGGCTTCACTTTCGGCTCGATTCAGGCTAGAGGATCGATGTTGATGTTCGTCGCAGC ATTCTTGACTTTCATGGCGATTGGAGGGTTCCCTTCTTTCGTCGAGGATATGAAGATATTCGGGCGAGAGAGGTTGAACGGACACTACGGAGTGGGAGCG TTTGTGATAGGCAACACGATCTCTTCAATCCCTTACCTCTTCCTAATCTCCATAATCCCGGGAGCCATTGCATACTTCCTCGTTGGCCTACAGCGGACCT TCGAGCACTTTGCCTACTTCGTTCTCCTCCTCTTTGTCACGATGATGCTGGTGGAGAGCCTGATGATGATGGTGGCCAGCATCGTCCCGGACTTCCTAAT GGGGATCATCACGGGAGCCGGGATCCAGGGAGTCATGATGTTGAACGGTGGCTTCTTCAGGCTCCCAAACGACCTTCCCAACCCGTTTTGGAGGTACCCT ATGTACTACATTGCCTTCCACAAGTATGCCTTCCAAGGGTTCTACAAGAACGAGTTCCTCGGGCTTGTGTTCCCTGACCGGCAAGGAAGCTCCACCACAA CTATTGGTGGTGAAGAGATTCTGAGGAGCATATGGGAAGTTGAGATGGGGTATTCTAAGTGGGTTGATCTTGCTGTGTTGCTTGGGATGGTGGTTGTTTA TAGGGTTATGTTTCTGGGGATCGTTAAGCTTCTTGAGAAGGTTAAGCCCTTGTTCAAGAAAAGCGGTTGA
AA sequence Show only first row Show all	>Lus10023154 pacid=23170392 polypeptide=Lus10023154 locus=Lus10023154.g ID=Lus10023154.BGIv1.0 annot-version=v1.0 MDSAATHDNKVPTWTPSPTRSSSIAVDAGDHVAMVKFPFSSDHDGGRDLEMEMDDHQNDDDWVEAAAGEKGGVFLTWKDLSVVVVAAAAEVGGNGRRRKT ILEGVTGYAEAGEALAIMGPSGSGKSTLLDTLAGRLGSKTQQTGEILINGRKETLAYGTSAYLTQDDTLMTTLTVREAVYYSAQLQLPDSIPLAEKKRRA DSIIAEMGLKESANTRIGGAWSSSNKGLSGGQRRRVSICIEILRRPKLLFLDEPTSGLDSAASYHVMSRILGLTRREGITVVASVHQPSGEVFRLFHNLC LLSSGRTVYFGPVSLAEQFFSSNGFPCPTFRNPSDHYLQTINKDFDLDIEKADGGGSFKTEEAIRVLVSSYKSSAIHQQTQQHVDYLCQQKKKGGLGKKG GEASMMSQSIVLTKRSFVNMYRDLGYYWLRLAVYIALCLCVGTIFYDIGFTFGSIQARGSMLMFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGVGA FVIGNTISSIPYLFLISIIPGAIAYFLVGLQRTFEHFAYFVLLLFVTMMLVESLMMMVASIVPDFLMGIITGAGIQGVMMLNGGFFRLPNDLPNPFWRYP MYYIAFHKYAFQGFYKNEFLGLVFPDRQGSSTTTIGGEEILRSIWEVEMGYSKWVDLAVLLGMVVVYRVMFLGIVKLLEKVKPLFKKSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10023154 [exp]	0	1
AT5G62280			Protein of unknown function (D...		Lus10031701 [exp]	6.5	0.8820
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	10.0	0.8843
AT1G15170			MATE efflux family protein (.1...		Lus10018135 [exp]	12.6	0.8500
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	14.4	0.8840
AT2G03810			18S pre-ribosomal assembly pro...		Lus10036829 [exp]	16.4	0.8010
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	16.6	0.8832
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10017794 [exp]	19.2	0.8121
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	19.4	0.8827
AT5G06440			unknown protein		Lus10013601 [exp]	23.2	0.7304
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	23.2	0.8233

Compare expression of checked genes

Lus10023154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.