Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16780 669 / 0 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) AT3G14700 98 / 5e-23 SART-1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000639 [exp] 1259 / 0 AT5G16780 818 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10000285 [exp] 360 / 5e-117 AT5G16780 187 / 1e-53 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10014613 [exp] 116 / 2e-30 AT5G16780 110 / 6e-29 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10032078 [exp] 72 / 2e-14 AT5G16780 47 / 8e-07 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082100 [exp] 755 / 0 AT5G16780 767 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Potri.003G148501 [exp] 0 / 1 AT5G16780 0 / 1 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03343 [flax] [poplar] SART-1 SART-1 family
Representative CDS sequence Show only first row Show all	>Lus10023155 pacid=23170290 polypeptide=Lus10023155 locus=Lus10023155.g ID=Lus10023155.BGIv1.0 annot-version=v1.0 ATGGATAAGAAGCATTACGAGTCTAGGCATGATCGCCGTGAGGAATTGGTTGATCCTGATGATTCTCCAAGAGCAGTTGGTGAAGATATGGGGCTAAATA GAGTTGAAAAGTCTAGCAAGCATGATAGTAGAGATAAGGACAGGAAGAAAAGTAGCAGGGCAGAAGATAAAGAGAGAGACAGAGACAAGGATCATAGATA TAAAGACCGGGAAAGATCTAAGAAGACTAGTGATGATGTTTCAACTGATTTGGACAAGGAACATTTGAAGTACAATGAGCGAGGTAAAGATAGGATCAAG GATGTCAAGGGTAAGGATAAAGATCATGATCGAGACAGATCTAGAGAAAAGGAACGAGACAAAGACAAGGAAAGAAAAGATCGAGGGAAGGATAAGGAGC GTGATAGGGGGAGAGAGACTGATAAAGAAAGAGGCAAGGAAAAGAATAGGGATAGAGAAAGAGAGAAGGAGAATGAGAAACTTAAGGATCAAGAGAAGCT GAGGGAAAATGATAAAGACGGAGACAGGAAAAGGGAAAGAGAGAATGCTAAAGAAAGAGAAGTGGATCAAGGTAAAGAAAGGTTTAGGGAAAGAGATGGG ACAGGCAAAGAGGACAGGCAAGACTACCCTGAGTGGTCTAAAGATGATAAAAAGCTGATGGGACGGGAATATGACGGACATAAGGATGTGTTGACATCTT TTGATGGAGATCAGAAAAATGCCGAGCGGTCTTCCACTGGAGGACAGACATCAACATCCGAACTCAGGGAGCGGATTATGAAGATGAAAGAAGAACGGAC AAGTAAGTCAGAAGCTGGTTCGGAAATCCTGTCTTGGGTCAACAAAACTCGTAAGCTTGAAGAAAAAAGGAACATTGCAAGGGAAAAAGCTAAGTGGCTG TCAAAGAACTTTGAGGAACAGGACAATCTTGGTCAAGGTGGAAGTGATGATGAAGAGGCAGCCCAAAACCATACACATGATTTAGCGGGAGTCAAAGTTC TTGATGGTCTAGACAAAGTGATAGAGGGTGGATCAGTGGTTTTGACACTAAAAGATCAAAGTATACTTGCCGATGGAGACATCAATAATGAGGTTGATAT GCTCGAGAATGTTGAGATCGGGGAGCAGAAACGGCGAGATGATGCTTACAAGGCTGCAAAGAAGCCAGCAGGGATATATTCTGAAGACAGGTTCAATGAC GACCCTATGGCAGAGAAAAAGATGCTTCCTCAATACTATGAACCTGTGGATGAGGGAGTGACGTTGGACAACAAAGGCCATTTCAGTGGTGAAGCAGAGA AAAAACTGGAGGAGTTGCGTAAAAGGCTACAAGGCGGTTCCACAAATAATCACACTGAAGATCTAAACTCGTCTGGAAAAATCTTGTCTGATTACTATTC TCAAGAAGAAATGATTCAGTTTAAGAAGCCGAAGAAAAAGAAATCCTTGCGAAAGAAGGATAAGTTGGACATTAAAGCTCTAGAAGAAGAAGCCATTGCT GAAGGATTAGGAGCCGGTGATCTTGGTTCAAGGAATGACGGTAGAAGGAAGGCTAGAGAGGAGCAGGAGAGACATGAGGCGGAAATGAGGACTGCTGCAT ATCAGCTAGCTTTAGCTAAAGCAGATGAGGCATCTAAAGCATTGCGATTAGGACACACAAATCCTGCTACAAAGGAAGACGTTGATGATGTGATGGTTGA TGAAGAGGATGACGATCTTCACAAAGCTATTGAAAAAGCTAGAAAATTGGCTCTGAAAAAGCAGAAGGATGCTCCAGTTGGTCCTGAAGCTATCGCTCGT CTTGCAACCACCCTTACGACAAATCAGATGACAGATGATCAAAATGCGGCCACAGACGAAGGACAAGAAGGCAAGGTTGTCTTCACTGAGATTGAAGAGT TTGTCTGGGGCTTGCAGTTTGATGAGGATGCCAATAAATCTGGTACAGAAGATGTATTTGAAGAGGAAGATGATGCAACAGCAGCTATTCATGAGGAAAG AGAAGATACGGCTGACGGGTTGACAGAAGTAAATGAGACGGTTAAAGGTGAAGACACTACCATGGAAGATGCGAAAGAGGTCACTGCAGCAGACGAGATA ATTCATGAAGTTCCTGTTGGTAAAGGATTATCAGGCGCATTAAAGCTGCTTCATGAGCGAGGGACACTGAAAGAAAGCATCAACTGGGGTGGTCGAAATA TGGACAAGAAAAAAAGCAAGCTTGTTGGTATTGTAGACACCGACGATAGGAAAAAGAAGGAGAATAATAAAGACAAGGATATGGATAGATTCAAAGATAT TCGTATTGAGAGGATGGACGAATTTGGCCGAATCATGACTCCAAAAGAGGCCTTCAGGATCATCTCTCATAGATTCCATGGCAAGGGACCTGGGAAAATG AAGCAAGAGAAGCGCATGAAGCAGTACCAGGAGGAACTAAAGCTGAAGCAAATGAAGAATTCAGATACACCTTCGTTATCCGTAGAGAGGATGAGGGAAA CTCAGGCGCAGCTAAAGACCCCATACCTCGTTCTTAGCGGCCATGTGAAACCTGGGCAAACAAGCGATCCGAGGAGTGGTTTCGCAACGGTGGAGAAAGA CCTTCCCGGGGGATTGACTCCGATGCTTGGTGATAAAAAGGTTGAGCATTTCCTGGGGATAAAACGGAAGCCTGATGCTGGGAGTGACAGCAGCACACCA AAGAAGCCCAAACCATGA
AA sequence Show only first row Show all	>Lus10023155 pacid=23170290 polypeptide=Lus10023155 locus=Lus10023155.g ID=Lus10023155.BGIv1.0 annot-version=v1.0 MDKKHYESRHDRREELVDPDDSPRAVGEDMGLNRVEKSSKHDSRDKDRKKSSRAEDKERDRDKDHRYKDRERSKKTSDDVSTDLDKEHLKYNERGKDRIK DVKGKDKDHDRDRSREKERDKDKERKDRGKDKERDRGRETDKERGKEKNRDREREKENEKLKDQEKLRENDKDGDRKRERENAKEREVDQGKERFRERDG TGKEDRQDYPEWSKDDKKLMGREYDGHKDVLTSFDGDQKNAERSSTGGQTSTSELRERIMKMKEERTSKSEAGSEILSWVNKTRKLEEKRNIAREKAKWL SKNFEEQDNLGQGGSDDEEAAQNHTHDLAGVKVLDGLDKVIEGGSVVLTLKDQSILADGDINNEVDMLENVEIGEQKRRDDAYKAAKKPAGIYSEDRFND DPMAEKKMLPQYYEPVDEGVTLDNKGHFSGEAEKKLEELRKRLQGGSTNNHTEDLNSSGKILSDYYSQEEMIQFKKPKKKKSLRKKDKLDIKALEEEAIA EGLGAGDLGSRNDGRRKAREEQERHEAEMRTAAYQLALAKADEASKALRLGHTNPATKEDVDDVMVDEEDDDLHKAIEKARKLALKKQKDAPVGPEAIAR LATTLTTNQMTDDQNAATDEGQEGKVVFTEIEEFVWGLQFDEDANKSGTEDVFEEEDDATAAIHEEREDTADGLTEVNETVKGEDTTMEDAKEVTAADEI IHEVPVGKGLSGALKLLHERGTLKESINWGGRNMDKKKSKLVGIVDTDDRKKKENNKDKDMDRFKDIRIERMDEFGRIMTPKEAFRIISHRFHGKGPGKM KQEKRMKQYQEELKLKQMKNSDTPSLSVERMRETQAQLKTPYLVLSGHVKPGQTSDPRSGFATVEKDLPGGLTPMLGDKKVEHFLGIKRKPDAGSDSSTP KKPKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10023155 [exp]	0	1
AT3G07930			DNA glycosylase superfamily pr...		Lus10001994 [exp]	1.0	0.8681
AT1G03760			Prefoldin chaperone subunit fa...		Lus10017711 [exp]	2.2	0.7966
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10008862 [exp]	2.6	0.7864
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000639 [exp]	4.0	0.8280
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	8.9	0.7834
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10017919 [exp]	10.8	0.8010
AT5G40570			Surfeit locus protein 2 (SURF2...		Lus10003658 [exp]	11.0	0.7615
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	12.5	0.7908
AT1G16810			unknown protein		Lus10033383 [exp]	12.6	0.7994
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10012902 [exp]	15.0	0.7452

Compare expression of checked genes

Lus10023155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.