Plant FIBer expression Database

Lus10023156 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G40050 728 / 0 Protein of unknown function (DUF3550/UPF0682) (.1)
AT3G03570 493 / 4e-168 Protein of unknown function (DUF3550/UPF0682) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012756
[exp]
1006 / 0 AT4G40050 620 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Lus10020328
[exp]
526 / 0 AT3G03570 771 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Lus10005664
[exp]
518 / 7e-178 AT3G03570 769 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G096800
[exp]
849 / 0 AT4G40050 750 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Potri.005G072200
[exp]
847 / 0 AT4G40050 753 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Potri.013G073200
[exp]
547 / 0 AT3G03570 794 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12070 SCAI Protein SCAI
Representative CDS sequence
>Lus10023156 pacid=23170375 polypeptide=Lus10023156 locus=Lus10023156.g ID=Lus10023156.BGIv1.0 annot-version=v1.0
ATGGCGGAGGAGGAGGCCGGTGTGGTGTCGCAGACGTTCAGGGCGCTGGTGGAGAGCGCGGACAGGAAGTTCGCCAAGGTGAGGGACCTTCCGGCGTACG
GTCGGGCGCACAACCACTACTTCCAGAAAGTGTTCAAGGCGTATATGAGGCTGTGGAAGTACCAGCAGGAGAACAGGCGGCACCTGGTTGCGGCGGGGCT
GAACCGGTGGGAAATCGGGGAGATCGCTAGCCGGATCGGGCAGCTCTACTTCAACCAGTACATGAGGTCTAGCGAGGCTAGGTTCCTGCTGGAGGCGTAT
GTCTTCTACGACGCGATTCTTCACCGTAGGTACTTCGATGGAGCCAACGCCAAGGATCTAGGCGTTAGATTTAAGGAGCTGAGGTTCTACGCTCGGTTTT
TGCTTGTATCGCTGATATTGAATCGCCACGAAACTGTTCAGCAGCTCGTCGAGAGGTTCGGAGCTCTCGTCGATGATAGCAAGTCTAAGTTTCGGGAAGC
AAGCTTCAAAGAATGGAAGCTGGTGGTGCAAGAAATTCTCCGCTTTATGGAAGTTGATACTGCATTCAAAAGTTCAAGGCCTGTGCGGTATTGTGCTCTA
TTTGATTCACATCCCTCTTCCCGACCATATGTGGCTCGTTTCCATGCAAAGAAAGTCCTGAAATTCACAGATGCAATTCTGACAAGCTACCATCGGAATG
AGGTTAAATTTGCAGAACTTACTATGGATACTTACAGAATGCTTCAACTTTTGGAATGGGAACCTAGTGGATCTTTCTATCAGAAACAACCTATTGAATC
TGTCTCTGGAAAGCGTCCTGTTGAGTCCCATGAAAATGGCTACGCAGTGGATCATTCTGCAGCTTCTGGGATGATAGATATGAACCTTGCTGCCGATCTG
ATAGATTCGGATCTTCCACCAAATCCTAGGAAGGCAGTTCTTTATCGTCCTTCTGTAACACACTTGTTAGCAGTTATGGCAACAATCTGTGAGGAGCTAC
CGCCTGAAAGCGTTATGCTTATTTATCTATCAGCTTCAGGAAAGAGTAATCAAAGCAGTGTTTTTGGCATGGACAGCCACAACGGATCTCGGAAGCCCTC
AAAATCGAAAGCTGTTTACAGCACAACACTTGCTGAAACAAATAACTCAAAGGCTGAATGTCACTCCAACGGGAAACCAGAGACTAGTGGCTACTGCAAT
GACTGTATATGGTTGGGTCCTAAAGGCAATGGTGGTCCTAATATCCTCTACCCGGGTGATATAATCCCTTTTACTCGTAAACCTCTTTTTATGATCGTCG
ATAGTGGCGACAGCCATGCATTCAAGGCAGAGAGACTCATGCTTTATGTTTCCAAAATTCAGGTGCTGCATGGCGCAGAGAGGGGAGAACCGGTCGCCTT
GATGCTTTCACCTTTAAGGTCATTATTTAAGAACACGTCCTCCGTTCGGAGTCCAATCCATAACGGAAGCCAGTTCACCTTCTTCTTAACTTCCCCATTA
CAAGCATTCTGCCAAATGGTTGGCCTCAACACTTCCGATATTGATACCGATGAATACAACAGCACGGAGGAAATACTCGCCACTGCGTTTGGCGAGTGGG
AGGTGATCCTCTGTACTTCAAGGAACCTGGATTTAGCCTGGGCACAAGTAGTTCTCGATCCATTTTTGCGGAGAATTATCCTTAGATTCATACTGTGCAG
AGCTCTGATGTTGTTCTTCAGCCCACCTAACCACATTGAGGAATGCACCCCGGTATGCGTCCCCGACCTTCCGAGTTCGGTATCAGCAGGGTCCGACATT
GTGCGGTCAGCAGTCCTTCGGCTCGCCGATCAACTCAACGTTGTCGAATGTTTCCGGTTCGACAACTCGACAGTAGGGAAATGA
AA sequence
>Lus10023156 pacid=23170375 polypeptide=Lus10023156 locus=Lus10023156.g ID=Lus10023156.BGIv1.0 annot-version=v1.0
MAEEEAGVVSQTFRALVESADRKFAKVRDLPAYGRAHNHYFQKVFKAYMRLWKYQQENRRHLVAAGLNRWEIGEIASRIGQLYFNQYMRSSEARFLLEAY
VFYDAILHRRYFDGANAKDLGVRFKELRFYARFLLVSLILNRHETVQQLVERFGALVDDSKSKFREASFKEWKLVVQEILRFMEVDTAFKSSRPVRYCAL
FDSHPSSRPYVARFHAKKVLKFTDAILTSYHRNEVKFAELTMDTYRMLQLLEWEPSGSFYQKQPIESVSGKRPVESHENGYAVDHSAASGMIDMNLAADL
IDSDLPPNPRKAVLYRPSVTHLLAVMATICEELPPESVMLIYLSASGKSNQSSVFGMDSHNGSRKPSKSKAVYSTTLAETNNSKAECHSNGKPETSGYCN
DCIWLGPKGNGGPNILYPGDIIPFTRKPLFMIVDSGDSHAFKAERLMLYVSKIQVLHGAERGEPVALMLSPLRSLFKNTSSVRSPIHNGSQFTFFLTSPL
QAFCQMVGLNTSDIDTDEYNSTEEILATAFGEWEVILCTSRNLDLAWAQVVLDPFLRRIILRFILCRALMLFFSPPNHIEECTPVCVPDLPSSVSAGSDI
VRSAVLRLADQLNVVECFRFDNSTVGK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G40050 Protein of unknown function (D... Lus10023156
[exp]
0 1
AT5G45840 Leucine-rich repeat protein ki... Lus10017439
[exp]
14.4 0.7519
AT2G41480 Peroxidase superfamily protein... Lus10020421
[exp]
15.0 0.7760
Lus10023874
[exp]
15.2 0.7792
AT5G13820 HPPBF-1, ATTBP1... H-PROTEIN PROMOTE, telomeric D... Lus10000947
[exp]
23.0 0.7707
AT3G11820 PEN1, AT-SYR1, ... PENETRATION1, SYNTAXIN RELATED... Lus10016173
[exp]
25.4 0.7731
AT3G02600 ATLPP3, LPP3 lipid phosphate phosphatase 3 ... Lus10013470
[exp]
27.3 0.7675
AT1G23770 F-box family protein (.1) Lus10006138
[exp]
29.7 0.7647
AT2G23450 Protein kinase superfamily pro... Lus10000741
[exp]
35.1 0.7582
AT4G28703 RmlC-like cupins superfamily p... Lus10014252
[exp]
36.0 0.7471
AT2G03810 18S pre-ribosomal assembly pro... Lus10019193
[exp]
37.3 0.7519

Lus10023156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.