Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09290 324 / 2e-108 unknown protein AT5G12410 49 / 5e-06 THUMP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012754 [exp] 184 / 5e-56 AT1G09290 104 / 7e-27 unknown protein Lus10019037 [exp] 44 / 0.0002 AT5G12410 410 / 8e-143 THUMP domain-containing protein (.1) Lus10005018 [exp] 44 / 0.0002 AT5G12410 415 / 9e-145 THUMP domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099500 [exp] 343 / 1e-115 AT1G09290 310 / 2e-104 unknown protein Potri.009G049700 [exp] 42 / 0.0006 AT5G12410 420 / 1e-146 THUMP domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023158 pacid=23170297 polypeptide=Lus10023158 locus=Lus10023158.g ID=Lus10023158.BGIv1.0 annot-version=v1.0 ATGATCAAACATCTTATGAAAACTGGCAAACTCAGAAGAGTGTTGGTGCGTGAGCTCACCGTCCCCGACAAGAATTGGATTGTAGACTGCAAATCCAACT ACACACGTCTCCAAACTATCTGCAACTCTATCATAGAAGCTCTTGATTTGGTCCTGGTAATCGAGCAAATTTTCAGGTCACTCACTGTTCATGAACCAAG GGTTTCCGCCACTGACAAGCAGGGTTCGCCAACCACCAATCCTTCGTCCGCCTTCTTCAGAGAAGTGATTTCTTCAATGATGGCCTCGACGGAACAAGGA AAAGGTACTGAAATCAGTCACAAACCAGACGCAGCAGAAGCAGAAGTAGCTGCCAATGTAATCGAAATAAAAGAGATGACGCCATGGGAACAGCACGCAG GGATCATCAGCATACCGCGATACGATTACAAAGCACCTTCCTCCCTTCTTCAACACTCCCACTCTGGCTTCCTCGTCACCTGCTCAATCAGGAGGGAGAA AAGTGCTACCAAGGAAGCAATGTTCATCTTCCAGAAGTATCTAGGGTCCAGCGACAGTGGTAATATTGAAGATGTTCGAGTTCTGGACTCGACCAGTAAG AGAAGAAAAGTATGTCAAGATGAAACAGATGGAAATGTTGAGGAGAAAGGTGAGGTTTCGGAAGATAAATGTCCAGTTGTTTCTAACAAAGAAACCAAGG AAGAAGAGAAGGTTTTGAATCTGTCACTAGTGAAGCTGATAAAAAGTGGTTTGCTCCTCTTTACTTTCCCTAGAGAAGCTTCTTCGTCCAACACTGTTGC TACCGTTTCGAAGATTTTCGATGACATTGAATCCGGGAGTTTGAAGCCACCAATCTGGTGTCACCGAATATTCCCGATCGAAGCTACATGTTGCTTGAAT GAGAAGGAACTACATGCAGCTGTTAAGAAGCTTGTTCTTGAATACTTACATGACCAGCAAATCAAGCCTCCGCAACCATTTAAGTTTGCAGTGGCTTATA ACAGAAGAGGTATGGAAGAGCAGAAGGTATTTTCCAGAGACGAAATGAAGGGTTCGGAAGTTGTTTCGCTGTTGGATCGCGACAAATGCTTTCACGTCGT TGCTTCTGCTGTGAAAGAGACTGTACCTGACTCCACCATTGACCTGAAATCTCCAGATATGTCGATCCTTGTCGAATTGCTGCCGCTTTCTGGAGTGGCG GATGGATCTTTGGTTGCTGCAGTGTCTGCTGTCCCGCAAAGGCTCACGAGTACGAAGCCGCGTCTTTGCATTAAGGCGCTGAGTTCTGATGCCAAGGAAA AGAAGTAG
AA sequence Show only first row Show all	>Lus10023158 pacid=23170297 polypeptide=Lus10023158 locus=Lus10023158.g ID=Lus10023158.BGIv1.0 annot-version=v1.0 MIKHLMKTGKLRRVLVRELTVPDKNWIVDCKSNYTRLQTICNSIIEALDLVLVIEQIFRSLTVHEPRVSATDKQGSPTTNPSSAFFREVISSMMASTEQG KGTEISHKPDAAEAEVAANVIEIKEMTPWEQHAGIISIPRYDYKAPSSLLQHSHSGFLVTCSIRREKSATKEAMFIFQKYLGSSDSGNIEDVRVLDSTSK RRKVCQDETDGNVEEKGEVSEDKCPVVSNKETKEEEKVLNLSLVKLIKSGLLLFTFPREASSSNTVATVSKIFDDIESGSLKPPIWCHRIFPIEATCCLN EKELHAAVKKLVLEYLHDQQIKPPQPFKFAVAYNRRGMEEQKVFSRDEMKGSEVVSLLDRDKCFHVVASAVKETVPDSTIDLKSPDMSILVELLPLSGVA DGSLVAAVSAVPQRLTSTKPRLCIKALSSDAKEKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09290			unknown protein		Lus10023158 [exp]	0	1
AT2G18460		LCV3	like COV 3 (.1)		Lus10026023 [exp]	7.8	0.6896
AT1G64880			Ribosomal protein S5 family pr...		Lus10021785 [exp]	11.7	0.7582
AT5G07810			SNF2 domain-containing protein...		Lus10003469 [exp]	12.8	0.7446
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10022452 [exp]	28.8	0.7412
AT2G25100			Polynucleotidyl transferase, r...		Lus10008965 [exp]	41.7	0.7325
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	47.2	0.7176
AT1G63110			GPI transamidase subunit PIG-U...		Lus10006320 [exp]	54.8	0.7066
AT1G60080			3'-5'-exoribonuclease family p...		Lus10021789 [exp]	83.8	0.6948
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10024946 [exp]	109.3	0.6887
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10025472 [exp]	132.2	0.6905

Compare expression of checked genes

Lus10023158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.