Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40060 171 / 2e-51 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT5G65310 169 / 1e-50 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT2G22430 167 / 1e-49 HD ATHB6 homeobox protein 6 (.1) AT3G01470 137 / 2e-38 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G69780 130 / 1e-35 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT5G15150 124 / 3e-33 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 123 / 3e-33 HD ATHB20 homeobox protein 20 (.1) AT2G46680 115 / 2e-30 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT1G26960 115 / 3e-30 HD ATHB23 homeobox protein 23 (.1) AT1G27045 110 / 8e-29 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022225 [exp] 133 / 6e-37 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 132 / 1e-36 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036730 [exp] 131 / 6e-36 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1) Lus10037200 [exp] 130 / 7e-36 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1) Lus10036674 [exp] 129 / 2e-35 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030493 [exp] 128 / 3e-35 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10012845 [exp] 128 / 3e-35 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10013277 [exp] 127 / 6e-35 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 128 / 8e-35 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G071900 [exp] 192 / 4e-59 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 189 / 4e-58 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.002G100600 [exp] 155 / 7e-46 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.005G161500 [exp] 151 / 5e-44 AT4G40060 187 / 4e-58 homeobox protein 16 (.1) Potri.015G065400 [exp] 134 / 4e-37 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 131 / 8e-36 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.017G081700 [exp] 129 / 3e-35 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.008G148200 [exp] 127 / 1e-34 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.010G093400 [exp] 125 / 6e-34 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.008G194400 [exp] 124 / 2e-33 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10023159 pacid=23170434 polypeptide=Lus10023159 locus=Lus10023159.g ID=Lus10023159.BGIv1.0 annot-version=v1.0 ATGAAGAGATCACTTGGGAGCACCGACTCTTTCGGAGCTCTCGTCTCCACCATCGCAACCTCTGAAGAGAAGCATGGCAGCCCAATGAACAGCAGCGGCG GAGGACACTTGTACGGCATGTTGGAGGAGGAAGACGGCGGCGTAGGAGGAGGAGGAGGGGAAGAGTACTCTGCCGGCGGATGCGGCGGAAGCGGGGGGCT GGGGGAGAAGAAGAGGCGGCTGAGCGTAGTACAAGTGAAGGCGCTGGAGAAGAATTTCGAGGTGGAGAATAAGCTCGAGCCGGAGAGGAAAGTGAAGCTT GCTCAGGAGCTAGGGTTACAGCCTAGACAAGTCGCCGTTTGGTTCCAGAACCGCCGCGCTCGCTGGAAAACTAAACAGCTGGAGCGTGACTACGGCGTCC TGAAAGCCAATTACGATTCACTGAAGCTCAATTACGACTCTCTTAAGCTTAACAACGAGTCTCTCGTCAAACAGATTCGAGATCTCAAATCCAAGCTCGC CGCCGACGGCGACGATGACGAAATACACGCCGCCGGTGATGAGATCGCGGAAGAGGAAGAAGATCGCGATGATGATGTAAATCTTCACCCGGCGGAGATT GTGCAGGAGCTGACAAACTCGTACGAGGAGGAGGAAGAAGAAGAAGAGGAAGCGCCGCCGTTGATTTTCAGCAGGGACGGATCGTCGGACAGCGATTCGA GCGCGATCTTGAACGACGAGTATAATTACGGTTATGCCTGTCCGCCGCCGCCGCCGGCGTTCACAGCGGCGAAACCGTACAACCAGACCCAACTGCTGGT GAAAGTGGAGGAGCACAATTTCTTCGGGAGCGAGGATCAGGAGGCGGCGTGTAATTTCTTCTCCGACGAGCAAGCTCCCAGCCTGAACTGGTGGAACTAA
AA sequence Show only first row Show all	>Lus10023159 pacid=23170434 polypeptide=Lus10023159 locus=Lus10023159.g ID=Lus10023159.BGIv1.0 annot-version=v1.0 MKRSLGSTDSFGALVSTIATSEEKHGSPMNSSGGGHLYGMLEEEDGGVGGGGGEEYSAGGCGGSGGLGEKKRRLSVVQVKALEKNFEVENKLEPERKVKL AQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDSLKLNNESLVKQIRDLKSKLAADGDDDEIHAAGDEIAEEEEDRDDDVNLHPAEI VQELTNSYEEEEEEEEEAPPLIFSRDGSSDSDSSAILNDEYNYGYACPPPPPAFTAAKPYNQTQLLVKVEEHNFFGSEDQEAACNFFSDEQAPSLNWWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10023159 [exp]	0	1
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10029622 [exp]	1.0	0.8759
					Lus10012752 [exp]	1.4	0.8536
AT4G05400			copper ion binding (.1.2)		Lus10035454 [exp]	1.7	0.8171
					Lus10029150 [exp]	7.7	0.8098
AT3G15095		HCF243	high chlorophyll fluorescence ...		Lus10013679 [exp]	10.9	0.7238
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	15.7	0.7624
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	15.9	0.7686
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10015954 [exp]	16.1	0.7861
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10012753 [exp]	19.0	0.7399
AT5G47830			unknown protein		Lus10024804 [exp]	19.5	0.7576

Compare expression of checked genes

Lus10023159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.