Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52820 244 / 9e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 204 / 4e-65 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52800 187 / 2e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52790 184 / 3e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 169 / 2e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 165 / 1e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 131 / 5e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 127 / 4e-35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03050 114 / 1e-30 AOP3 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G23340 91 / 2e-21 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016659 [exp] 272 / 1e-91 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023024 [exp] 241 / 2e-79 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005516 [exp] 178 / 3e-54 AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006575 [exp] 172 / 2e-53 AT1G52820 221 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008097 [exp] 161 / 4e-48 AT1G52800 221 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013132 [exp] 150 / 6e-44 AT1G52800 222 / 8e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10041281 [exp] 140 / 8e-41 AT1G52790 298 / 5e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013130 [exp] 130 / 2e-36 AT1G52820 200 / 3e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021025 [exp] 125 / 2e-34 AT1G52800 226 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176200 [exp] 251 / 2e-83 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 208 / 1e-66 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 201 / 1e-63 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176500 [exp] 189 / 5e-59 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176000 [exp] 186 / 8e-58 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 170 / 2e-51 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033400 [exp] 165 / 9e-50 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 144 / 1e-41 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G106900 [exp] 103 / 6e-26 AT4G23340 392 / 1e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.003G128100 [exp] 97 / 1e-23 AT4G23340 458 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10023160 pacid=23170304 polypeptide=Lus10023160 locus=Lus10023160.g ID=Lus10023160.BGIv1.0 annot-version=v1.0 ATGGGAGAAGCTCCCCACATTCCGCTCCCGTTGTATGAGAGCGTCGGGATTGGTAGCCCTCATGTTCACGAAAAGGTCGAAGAGTTCGCCAATATACTTT GGCCTCAAGGACATCCAAAGTTTAGCAAGTCGGTCCAGTTCTACGCGGAGCAAATCGTGGGGCTGGACGAAACAGTGAGAAGAATGGTGTTGGAGAGCTT TGGGCTGGACAAGTTCATCGACGAGCACTTGGACTCCACAGAGTACTTGCTGAGGGTGATGAAATACAGAGCTCCGAAAACGAGCGATGAACAGGACGCC ATGCTTCCGCATACCGACAAAGGATTCATGACGATACTGCACCCGAACGATGTTTCGGGATTGGGAATCCAGACCAAAGAAGGAGAATGGATCGAGTTCA ATCGATCTCCCAACACTTACCTCGTTATGATGGCTGATTGCTTCTACGCTTGGTTGAATGGTCGAATCAAAGGTGCGATGCATCGGGTTAAGCTAAGTGG AGACGAGCCCAGATACTCGATGGGTTTGTTCACTGTCCCGAAGCCCGGAGTTACAATCCAAGCCGCAGAAGGAATGGTGGACGAAGAGCATCCTCAGCTG TTCAAGCCGTATAAGTTGGCTGAGTTCCTTGTGTATTATGACACCAAAGCTGGCCAGACATCGCCAACTCCTCTCAAAGATTACTGCGGCACCGGGGTTT GA
AA sequence Show only first row Show all	>Lus10023160 pacid=23170304 polypeptide=Lus10023160 locus=Lus10023160.g ID=Lus10023160.BGIv1.0 annot-version=v1.0 MGEAPHIPLPLYESVGIGSPHVHEKVEEFANILWPQGHPKFSKSVQFYAEQIVGLDETVRRMVLESFGLDKFIDEHLDSTEYLLRVMKYRAPKTSDEQDA MLPHTDKGFMTILHPNDVSGLGIQTKEGEWIEFNRSPNTYLVMMADCFYAWLNGRIKGAMHRVKLSGDEPRYSMGLFTVPKPGVTIQAAEGMVDEEHPQL FKPYKLAEFLVYYDTKAGQTSPTPLKDYCGTGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023160 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10033385 [exp]	1.0	0.9570
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006700 [exp]	2.8	0.9323
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10009226 [exp]	2.8	0.9000
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	3.0	0.9225
					Lus10033191 [exp]	9.5	0.8692
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	11.2	0.8654
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	12.2	0.8837
					Lus10028940 [exp]	13.7	0.8578
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	14.2	0.8779
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10003459 [exp]	14.9	0.8352

Compare expression of checked genes

Lus10023160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.