Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64300 739 / 0 ATGCH, ATRIBA1, RFD1 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) AT2G22450 617 / 0 riboflavin biosynthesis protein, putative (.1) AT5G59750 580 / 0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012751 [exp] 994 / 0 AT5G64300 755 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10035929 [exp] 841 / 0 AT5G64300 763 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10025733 [exp] 833 / 0 AT5G64300 757 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10040865 [exp] 571 / 0 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10006669 [exp] 511 / 4e-178 AT5G64300 513 / 5e-179 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10007013 [exp] 508 / 1e-174 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10005882 [exp] 421 / 2e-142 AT5G59750 502 / 2e-175 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G097300 [exp] 790 / 0 AT5G64300 773 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G310500 [exp] 750 / 0 AT5G64300 764 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.017G050400 [exp] 715 / 0 AT5G64300 714 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.005G071600 [exp] 692 / 0 AT5G64300 647 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G234900 [exp] 590 / 0 AT5G59750 770 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00926 [flax] [poplar] DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 [flax] [poplar] GTP_cyclohydro2 GTP cyclohydrolase II
Representative CDS sequence Show only first row Show all	>Lus10023161 pacid=23170442 polypeptide=Lus10023161 locus=Lus10023161.g ID=Lus10023161.BGIv1.0 annot-version=v1.0 ATGGCGTCACCAGTTCATTTCCTCAGCTCCCCTTTGGCGGCTCCTTATCGTTTCCAAGGGTACCCTGGAAAGATCGTGTCTTTGGCGGTGAATGGGAACT TTAGTACTACTATTACTACTACGGTGTCGTCCTCATCAAACCCTAGAAAGCTGTACGCTGGTTTCAATGGTGGTAGTAGTAGGTCAGCTAGACTCTGTGT GTTTTCTGGGGAAGGAGACCTCCTTTCTTCACTTGGTGGGATTGAATTGCAGCCTGAGGTAGTGGATTTCGCTACTCTGTCTGCCGAGTTAACTCCCACC AGGTCTGGTTTCTCGCCTGATAATGATGAATATGACCTGGATCGTCCTACCCTAGGGTTCAGCTCCATCCCTGATGCAATTGAAGATATCCGCCAAGGCA AGCTTGTGATCGTGGTTGATGATGAAGATAGAGAAAATGAAGGGGACCTGATAATGGCAGCTTCTAAGGCAACACCTGAAGCAATGGCATTTATTGTCAA GCATGGAACTGGGATAGTCTGTGTAAGCATGCAAGGTGAAGATTTGGAGAGACTGCAGCTTCCTTTGATGGTCTCAACAAAGGAGAATGAGGAAAAGCTT TCCACTGCCTTTACAGTTTCAGTTGATGCGAAAGTCGGCACCACAACTGGCGTTTCAGCTCGTGACAGGGCAACGACGATATTGGCTCTAGCGTCTAAGG ATTCCAAACCAGAAGATTTCAATCGTCCAGGGCATATATTCCCTCTCAAGTATAGAGAGGGAGGTGTTCTGAAGAGAGCCGGTCACACAGAAGCCTCGGT TGATCTCTCGGTGCTTGCTGGATTAGAACCTGCTGCAGTTTTGTGTGAGATTGTCGACGATGATGGTTCTATGGCTAGACTTCCCAGGCTTCGAGAGTTT GCAAAAGCCGAGAATCTAAAGATCGTCTCGATAGCAGATCTCATCAGTATAGTTTTCGATTTGCTTATAAACGATATTCCACCTGAAACAAAGGAAGTCT TTCTTGTCACTGTCAGATTTAGAAGGAAAAGGGACAGACTTGTCGAACTTTCGGCTGCTGCTCGGATACCAACCATGTGGGGGCCTTTCAAATCCTATTG TTACAGGTCATTGATTGATGGAATTGAGCATATCGCCATGGTTAAAGGTGACATCGGGGAAGGTAAGGATATTCTCGTCCGTGTGCACTCTGAGTGTCTC ACAGGCGATATATTCGGTTCAGCAAGATGTGATTGCGGTAATCAGCTAGCACTTGCCATGAAGCAAATTGAAGCAGCTGGGAGAGGTGTGCTGGTGTATC TCCGTGGACACGAAGGTAGAGGTATCGGTTTAGGCCACAAACTGCGTGCATACAACCTGCAAGATGACGGTCGTGATACAGTCGAAGCAAACGAGGAGCT TGGTCTTCCAGTCGATTCCCGCGAATATGGTATCGGTGCACAGATACTCCGAGATCTAGGCGTCCGAACAATGAAACTGATGACAAACAATCCGACAAAG TACATTGGCCTCAAAGGATACGGTCTGTCGGTCGCTGGAAGAGTGCCGTTGATAACCCCGATCACAAGTGAGAACCAGAGGTACCTCGAAACTAAGAGAC AGAAAATGGGGCATGTCTATGGTCCTGATTCAACAATCTCTAACGGATCATCAGATGGTCTGTTGGAGGCTTAG
AA sequence Show only first row Show all	>Lus10023161 pacid=23170442 polypeptide=Lus10023161 locus=Lus10023161.g ID=Lus10023161.BGIv1.0 annot-version=v1.0 MASPVHFLSSPLAAPYRFQGYPGKIVSLAVNGNFSTTITTTVSSSSNPRKLYAGFNGGSSRSARLCVFSGEGDLLSSLGGIELQPEVVDFATLSAELTPT RSGFSPDNDEYDLDRPTLGFSSIPDAIEDIRQGKLVIVVDDEDRENEGDLIMAASKATPEAMAFIVKHGTGIVCVSMQGEDLERLQLPLMVSTKENEEKL STAFTVSVDAKVGTTTGVSARDRATTILALASKDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLSVLAGLEPAAVLCEIVDDDGSMARLPRLREF AKAENLKIVSIADLISIVFDLLINDIPPETKEVFLVTVRFRRKRDRLVELSAAARIPTMWGPFKSYCYRSLIDGIEHIAMVKGDIGEGKDILVRVHSECL TGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPTK YIGLKGYGLSVAGRVPLITPITSENQRYLETKRQKMGHVYGPDSTISNGSSDGLLEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10023161 [exp]	0	1
AT5G23890			unknown protein		Lus10014972 [exp]	1.4	0.9086
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10010496 [exp]	3.9	0.8996
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	5.3	0.8997
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	6.9	0.8917
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10006192 [exp]	12.6	0.8213
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	21.1	0.8272
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	21.9	0.8265
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	24.7	0.8765
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004783 [exp]	29.3	0.8388
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	31.4	0.8260

Compare expression of checked genes

Lus10023161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.