Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10370 1782 / 0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) AT4G01020 1781 / 0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) AT3G26560 379 / 1e-109 ATP-dependent RNA helicase, putative (.1) AT1G32490 333 / 3e-95 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT5G13010 333 / 1e-93 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT2G35340 327 / 4e-93 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT1G27900 287 / 2e-82 RNA helicase family protein (.1) AT3G62310 285 / 2e-81 RNA helicase family protein (.1) AT2G47250 285 / 2e-81 RNA helicase family protein (.1) AT4G18465 275 / 2e-78 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012750 [exp] 612 / 0 AT5G10370 267 / 9e-76 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Lus10036783 [exp] 377 / 1e-108 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10037145 [exp] 346 / 4e-99 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 328 / 1e-92 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10036991 [exp] 306 / 8e-89 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 305 / 2e-88 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10033690 [exp] 290 / 2e-79 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 275 / 1e-77 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 237 / 2e-65 AT4G18465 1033 / 0.0 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G071500 [exp] 2056 / 0 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.017G050100 [exp] 1741 / 0 AT4G01020 1719 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.015G024400 [exp] 375 / 3e-108 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 370 / 2e-106 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.010G172500 [exp] 337 / 7e-95 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.015G008700 [exp] 325 / 2e-92 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.010G057200 [exp] 299 / 2e-86 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 283 / 1e-80 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 278 / 2e-79 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 278 / 4e-79 AT3G62310 1276 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10023162 pacid=23170344 polypeptide=Lus10023162 locus=Lus10023162.g ID=Lus10023162.BGIv1.0 annot-version=v1.0 ATGAGTCGCCCGTCCGAAGCCGCTTTCCGACGGTCTCAGCCGCCGGGGAACCTCTCAGGCAACCCCCGGCCTCCTTTTCCCCACAACAACTACCACAACC AACAGCAACAGCAAAAACCCTACTCCTACAACAGAAACTACAACCGCAACAATCCCGGCGCCAACTACCAGTCTCCCCGCCGTGACGCCGGACCCCCTGC CACTCGCATCCGTCCGAACTTCGTGATCAGGCTACTCATCGACCGCACTGACGGCGGCGAGTCACGCACGACTCCCGACACCGCCGCTCTCATCTCGGAA TGCGCTCCTGATGCCAGTCGCATTGTCTTCTCTTCGAGCGCCACCGTGGCTGCTACTCTCTACTTCTGCGAGTGGGGGCAGGCTCGCTCCACGATGACGA AGCTGTGGGATCGCCGGCTGAAGGGCGATCACTGCTTAAACCCTAGCCTCGAGAGCTTCGTGATGGTTCCTTCTGACTCCGATGAGCTGAGGCGTGACCT CGGGGAGATTTTCGCCGACTACGTTCGTGGTGTGATCGGCGGAGGAGAGGTCGTTGGGGAGTTGAATTCGAAGGTGGAGGGGAAGCGTCGTGAAATTGAA GAGGTTTCGAAGCAGCTGAGGGCGAAGAGGGGGAATCGATTGGGTGCTTTCGCGAAATTGAATGACAGGAAGAAGTTCTTGGTGTCGGAGTTTGAGTTGA TGAAGAAGAGACTTGGGGAGTTTAAGGCGGCGTTGAGGTGTGTTTTGAAGTATATTGGTGGCGGGAACTTGGAGGAGGAAGAAGATGAAGGAGCGGTGGA TGTAGTAGAGCCCTTGGTGCTGGAAGGGGAAATTGATTGGGTAAAGATTCATAGGGTTATTCTCAGGGAGATTCGAAGGCTGCATGATGGACTTCCAATT TACGCTCACCGGAGGGAAATTCTGGCCAGAATTAGGGATTCGCAGATCCTGGTTTTGATTGGGGAGACGGGTTCTGGAAAGAGCACACAGTTGGTTCAGT TCCTGGCTGATTCTGGCATTGGATCAAGTGATTCTGTTATATGTACACAGCCTCGGAAAATTGCTGCCATGTCAATTGCTGATAGGGTCAAACGAGAGTC CCGTGGCTACTACAAAGACAATTCTGTTGTCTCTTATCCAACCTTTTCATCCAACCAAGAGTTTGGTGCGAAAATTATATATGCAACTGACCATTGCTTG TTGCAGCACTTCATGCATGACAGGAATTTGTCTGGGATTTCCTGCATTGTCATTGACGAGGCTCATGAAAGAAGCTTAAGCACTGATCTGCTCTTGGCAT TAATCAGACGGTTGCTGCTTGATCAGACACGAGACTTGAGGCTTGTAATCATGTCTGCAACAGCTGATGCCAACCAGCTATCAGATTACTTTTTTGGTTG CGATATCTTTCATGTATCAGGGAGAAACTTCCCTGTTGACGTAAGGTATGTTCCATGTAGCAATGAAGCCAGCACATCTGGAGCAATTGCTGCTTATGTC TATGAGGTGGCCAGGATGGCCAAAGAGATTCACAAAACTGAGAAAAAAGGGGCGATTCTAGCTTTCTTGACTTCCCAAATGGAAGTTGAATGGGCTTGTG AAAATTTTGAAGCTTCCTTGGCCATTGCATTGCCATTGCATGGAAAGCTTTCTCATGAAGACCAGTTCCGTATTTTTCAGGAATACCCAGGGAAAAGAAA GGTCATATTTGCTACTAATCTTGCAGAGACATCACTGACAATTCCAGGGGTGAAGTATGTGGTTGATTCAGGGATGGTCAAAGAGAGCAGATTTGAATCA GGAACTGGTATGAGTATGCTTAAAATTTGTAGGATCAGCCAAAGCTCTGCCCAACAACGAGCTGGTCGTGCTGGAAGAACAGAACCTGGGATATGTTATA GGCTATACTCTGAACAGGATTTTGAATTGATGCCTCTCAATCAGGAGCCAGAGATTCGCAGAGTGCATCTTGGTATTGCAGTCCTGAGGATCCTTGCTCT AGGAATCAAGAATATAAACGAGTTTAACTTTGTCGATGCACCCAGTCCTCAAGCCATTGACATGGCCATTAGAAATCTTGTTCAATTAGGTTCGATCAGA AAGACTAATGGCATGCATGAATTAACTGATGAAGGCCGCTACTTTGTTAAACTTGGAATTGAGCCCCGACTTGGTAAGCTCATTCTTACTTGCTGCCGCC ATGGCCTAGGGAAAGAAGGCCTTGCTCTTGCAGCTGTAATGGCCAATGCTAGCAGTATATTTTGTAGAGTTGGCAGTAGAGATGACAAGATAAAAGCCGA CTGTTTTAAGGTGCAGTTTTGTCATCAAAGCGGGGACCTCTTAACTCTACTATCTGTATTCAAGAAGTGGGAGGCTGTGCATCGAGATTCTAGAAATAAA TGGTGTTGGGACAACAGCATAAATGCCAAAGCTATTCGAAGGTGCCATGAATCAGTTAAAGAAATAGAAGAATGCCTTCGAAGGGAACTCAACATTATTG TCCCAACACACTGGCTTTGGTCTCCTTTTAGGTCTACGGAGCATGATAAATATTTGAAGTTGGCTATACTCTCTTCTCTTGTGGAAAATGTTGCCATGTA CTCTGGATATGATCAAGTGGGTTATCAAGTGGCAATGACTGGGCAAAACGTTCGGCTACATCCTTCCTGTTCGCTACAAATGTTTGCTGAGAAACCTCAT TGGGTTGTTTTCAGTGAACTTTTGTCAACAACTAATGATTATTTGGTCTGTGTTACTGCTTTCGACTTCGAATCCTTGTCTACTCTTGAACCTCCTCCAT TGTATGATTTTAATAAGATGGAGTGTCAGAAACTAAAGTTCAAGAGACTAACTGGCTTCGGAAGTCTCCTTCTCAAAAGGTTTTGTGGGAAGTACAAAAG CAATTTGCAGTCTTTTGTGAAGTCTTGTCAGAGTACCTGTTCTGACAAAAGGATTGGTATTGAGGTCGACATTGACCAGAATGAAATTCAGCTATTTGCT ACTACAGAGAATATGGAGAAGCTGTCTGGTCTTGTTGAGGAAGCTGTGGAGTATGAGCGGAAAGCATTACGTAATGAATGCATGGAGAGACATCTCTACC ATGGAGTTAGCTTTTCATCCTCTGTTGCACTTTTCGGAGCTGGTGCTGTGATCAAGCATTTGGAGCTTCAGAAAAGATATCTGACTGTTGAAATATTTCT TTCTGTGGATTTGGTCGATGATGATAAGGAGCTTTTGATGTTTGTTGAGGAATTCACATCTGGTACTATTTGTTCAATCCACAAGTTCTTCAATGCCCAA AGAGGTGGTGAGAATCACAAGTGGGGAAAGATAACGTTCCTATCCCCAGACGCTGCGGAAAAGGCATGCCAGCTTGACGGAGTCGAATTCCATGGATCCA TCCTGAAAGTGATTCCTTCGCAAACAAGCTTCAAGTCTGATCACACACCATTTTCTTTCCCAGCTGTTAGTGCAAAGGTTTATTGGCCTCGTAGGTACAG TACTGGTACTGCAATTGTCAGATGCTACAATGCAGATGATGCTACATTCTTGGTTGAGGACTTGTCTCGACTAGTAATAGGAGAAAAGTACATCCGGTCT TCAAGAAGCAGACAACGCGATGACTGCGTTGTTTTATACGGGATCGATAAATCGACTTATGAAGGTGATATTAAAGACTCGGTCGTTACTTTTGCAGGGA GGCAAATTCAAGATGTATTTTTGTTGTGGGGTGATGCTTTGCCAGATACTGCACCTAGTGTTTGTGAAGAAGCACTTATGCGAGAGATCGCTCCTTTCAT GTCTAAACAAAATCCAAATACTAGCAATTGCAGAGTCCTAGTCTTTCCTCCTGGACCGAAAGATGCTTATAGGAGAGCTGAAATTACCTTTGATGGGAGA TTGCATCTTGAGGCAGCTAAAGCTTTGGAGAATCTAGAAGAGAAAGTATTCCCCGGAGGTCTTCCGTGGCAGAAAATCAAGTGCCAGCAGTTGTTTCACA GCTCATTGACCTGTTGTCCCTCTGTTTATTTCGCAATAGAGAAGCAACTGGATTCTTTGCTGGAAAGTTTCAGAACTCGGAATGGTGTCATATGCACAGC AGAGAAGCTTTCCCATGGTTCATGGCGAGTAAAAATTTCCGCCAACGCTACAAAGACTGTTGCAGAGCTTAGAAGGCCTCTGGAAGAACTTATGAGAGGA AGGATAATAAACCACGAAGGCCTAAGTCAAACAGTACTACAGCATCTATTCACCCCTCACGGCATGAACTTAATGCGAGAAATACAGCAGCAGACTCGAA CCTACATTCTCTTCGACCGGCGTAACTTCAACGTTAGAATCTTCGGATCTTCAACTAACATCACTGCAGCCGAGAACAGACTGATCGAATCTATTCTGGC CTACCATGAGAGCCGACAGCTCCAGATTCATATGATAGTTGGAGGCCTACCTCCAGACTTGATGAAGCGAGTAGTAGAGAAGTTCGGTCCGGACCTCAAG GGGCTGAAATCAATGTTCCGGGAAGCGGAATTCGCGCTGGACACGAGACATCATGTCATTTCCGTTCATGGTAGTAAAGAAGTCAAGAAAAGAGTGGAAG AAGTGGTTAAAAAAGTCGCGAGCGATCAATACGCTACTACCGAGCAGGTTTCGAGCGATCTATCATGTCCGATCTGCTTGTGTGAAGTCGAGAAGGGATA CCGACTCGAATCCTGCTCGCATTTATTCTGCCAGCCGTGTTTAATGGAGCAATTCGAATCGGCCATGAAAAACCTCGACAGCTTCCCGGTTTGTTGTGCT CAGTGCAGGATGCCGATATACCTCACGGATTTGAGATCCCTCTTATCGATCGAGAAATTGGAAGAACTGTTCCAAGCGTCGCTGAGATCTTTCGTGGCAT CGAGTGGTGGAAATTACCGGTTCTGTCCCTCTCCCGACTGCCCTTCTGTCTATCAAGTGACGCTAACTGGCACGGAGGAAGCTCCCGAGCCTTTCTCGTG CGAGGTATGCTTCACCGAGACTTGTACCAGCTGCCACTTGGAGAACCATCCGTCTGTTTCGTGCGAGAGATACAAGGAGTATAAGGAAGACCCTGACTTG TCGCTCAAGGAATGGTGCAGGGGAAAAGACCATGTCAAAACCTGCCCGGTTTGCTTCTTCACGATCGAGAAGGTCGATGGGTGTAATCACGTGGAGTGCC GTTGCGGAAGGCATACTTGTTGGGTTTGCTTAGAGCATTTCGACAGCAGCCAAGAGTGCTATGCCCATCTCCAGACGATGCTGCATGTCTGA
AA sequence Show only first row Show all	>Lus10023162 pacid=23170344 polypeptide=Lus10023162 locus=Lus10023162.g ID=Lus10023162.BGIv1.0 annot-version=v1.0 MSRPSEAAFRRSQPPGNLSGNPRPPFPHNNYHNQQQQQKPYSYNRNYNRNNPGANYQSPRRDAGPPATRIRPNFVIRLLIDRTDGGESRTTPDTAALISE CAPDASRIVFSSSATVAATLYFCEWGQARSTMTKLWDRRLKGDHCLNPSLESFVMVPSDSDELRRDLGEIFADYVRGVIGGGEVVGELNSKVEGKRREIE EVSKQLRAKRGNRLGAFAKLNDRKKFLVSEFELMKKRLGEFKAALRCVLKYIGGGNLEEEEDEGAVDVVEPLVLEGEIDWVKIHRVILREIRRLHDGLPI YAHRREILARIRDSQILVLIGETGSGKSTQLVQFLADSGIGSSDSVICTQPRKIAAMSIADRVKRESRGYYKDNSVVSYPTFSSNQEFGAKIIYATDHCL LQHFMHDRNLSGISCIVIDEAHERSLSTDLLLALIRRLLLDQTRDLRLVIMSATADANQLSDYFFGCDIFHVSGRNFPVDVRYVPCSNEASTSGAIAAYV YEVARMAKEIHKTEKKGAILAFLTSQMEVEWACENFEASLAIALPLHGKLSHEDQFRIFQEYPGKRKVIFATNLAETSLTIPGVKYVVDSGMVKESRFES GTGMSMLKICRISQSSAQQRAGRAGRTEPGICYRLYSEQDFELMPLNQEPEIRRVHLGIAVLRILALGIKNINEFNFVDAPSPQAIDMAIRNLVQLGSIR KTNGMHELTDEGRYFVKLGIEPRLGKLILTCCRHGLGKEGLALAAVMANASSIFCRVGSRDDKIKADCFKVQFCHQSGDLLTLLSVFKKWEAVHRDSRNK WCWDNSINAKAIRRCHESVKEIEECLRRELNIIVPTHWLWSPFRSTEHDKYLKLAILSSLVENVAMYSGYDQVGYQVAMTGQNVRLHPSCSLQMFAEKPH WVVFSELLSTTNDYLVCVTAFDFESLSTLEPPPLYDFNKMECQKLKFKRLTGFGSLLLKRFCGKYKSNLQSFVKSCQSTCSDKRIGIEVDIDQNEIQLFA TTENMEKLSGLVEEAVEYERKALRNECMERHLYHGVSFSSSVALFGAGAVIKHLELQKRYLTVEIFLSVDLVDDDKELLMFVEEFTSGTICSIHKFFNAQ RGGENHKWGKITFLSPDAAEKACQLDGVEFHGSILKVIPSQTSFKSDHTPFSFPAVSAKVYWPRRYSTGTAIVRCYNADDATFLVEDLSRLVIGEKYIRS SRSRQRDDCVVLYGIDKSTYEGDIKDSVVTFAGRQIQDVFLLWGDALPDTAPSVCEEALMREIAPFMSKQNPNTSNCRVLVFPPGPKDAYRRAEITFDGR LHLEAAKALENLEEKVFPGGLPWQKIKCQQLFHSSLTCCPSVYFAIEKQLDSLLESFRTRNGVICTAEKLSHGSWRVKISANATKTVAELRRPLEELMRG RIINHEGLSQTVLQHLFTPHGMNLMREIQQQTRTYILFDRRNFNVRIFGSSTNITAAENRLIESILAYHESRQLQIHMIVGGLPPDLMKRVVEKFGPDLK GLKSMFREAEFALDTRHHVISVHGSKEVKKRVEEVVKKVASDQYATTEQVSSDLSCPICLCEVEKGYRLESCSHLFCQPCLMEQFESAMKNLDSFPVCCA QCRMPIYLTDLRSLLSIEKLEELFQASLRSFVASSGGNYRFCPSPDCPSVYQVTLTGTEEAPEPFSCEVCFTETCTSCHLENHPSVSCERYKEYKEDPDL SLKEWCRGKDHVKTCPVCFFTIEKVDGCNHVECRCGRHTCWVCLEHFDSSQECYAHLQTMLHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	0	1
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	1.0	0.8151
AT3G07565			Protein of unknown function (D...		Lus10025581 [exp]	3.9	0.6839
AT1G11060			WAPL (Wings apart-like protein...		Lus10011196 [exp]	3.9	0.7867
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	5.5	0.8022
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	9.2	0.7659
AT1G27752			Ubiquitin system component Cue...		Lus10018693 [exp]	11.0	0.6988
AT4G30790			unknown protein		Lus10007700 [exp]	15.5	0.7475
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	18.5	0.7018
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009011 [exp]	19.8	0.6672
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	19.8	0.7447

Compare expression of checked genes

Lus10023162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.