Plant FIBer expression Database

Lus10023163 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46550 55 / 4e-09 unknown protein
AT1G01240 39 / 0.0009 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012748
[exp]
278 / 4e-97 AT2G46550 57 / 6e-10 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G097400
[exp]
106 / 7e-29 AT2G46550 66 / 5e-13 unknown protein
Potri.005G071400
[exp]
102 / 4e-27 AT2G46550 80 / 5e-18 unknown protein
Potri.014G100300
[exp]
42 / 8e-05 AT2G46550 213 / 2e-64 unknown protein
Potri.002G173200
[exp]
42 / 9e-05 AT2G46550 180 / 2e-52 unknown protein
PFAM info
Representative CDS sequence
>Lus10023163 pacid=23170296 polypeptide=Lus10023163 locus=Lus10023163.g ID=Lus10023163.BGIv1.0 annot-version=v1.0
ATGGCTGGATCGGAGTCCAGCCACCCCAAGTTGAAATTCCGAGTCCCTAAACTGAACGACCCATTGATGTCCTGTTTGATGCAGAACTGCGATCTCCCTC
CACCTTCAAAGCTCTACTATGGGTCCGACGAGCTTATCGTTTCATCTTCCAACCGTGTTTTTGCGCTGATGGTACAACAAAGCAACGACCACGGCCACAA
AGACGAAAAGGTGGAAGGGTACAAAGCGGGCAGTGAGAAGTTGGACCTGCTGAAAGCAGTGAGGCTCTCGCAAACGAGGGCGAGAGAAGCAGAGAAGAGA
GCAGAGAGTCTATCCAATGCCCTGTCAGTGGAGTCACTCCAGCTCTTTGCGTATCGGCAGTGGTCGAAGCTGCTCGAGGCTCGAATTCTCAAGCTCGAAG
CAGAGTTAGCCGAATCAGCTGAGGCAAAAAGGAGAGATGGAGATGGAGTAGAGCCATGCTTACCGTGGACGCTGTCTCTGGCTTTTTGTCTTGGTATTGC
AGGGGCAGGCATTGTAGTAATTGGTTTTAGGTACTGGTTTTGA
AA sequence
>Lus10023163 pacid=23170296 polypeptide=Lus10023163 locus=Lus10023163.g ID=Lus10023163.BGIv1.0 annot-version=v1.0
MAGSESSHPKLKFRVPKLNDPLMSCLMQNCDLPPPSKLYYGSDELIVSSSNRVFALMVQQSNDHGHKDEKVEGYKAGSEKLDLLKAVRLSQTRAREAEKR
AESLSNALSVESLQLFAYRQWSKLLEARILKLEAELAESAEAKRRDGDGVEPCLPWTLSLAFCLGIAGAGIVVIGFRYWF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G46550 unknown protein Lus10023163
[exp]
0 1
AT5G56460 Protein kinase superfamily pro... Lus10013406
[exp]
2.0 0.8849
AT2G43290 MSS3 multicopy suppressors of snf4 ... Lus10027701
[exp]
2.6 0.8960
AT3G55600 Membrane fusion protein Use1 (... Lus10037405
[exp]
3.2 0.8552
Lus10033310
[exp]
4.0 0.8900
AT5G51570 SPFH/Band 7/PHB domain-contain... Lus10015032
[exp]
4.6 0.8888
AT2G17840 ERD7 EARLY-RESPONSIVE TO DEHYDRATIO... Lus10005067
[exp]
5.1 0.8475
AT5G56150 UBC30 ubiquitin-conjugating enzyme 3... Lus10016670
[exp]
7.4 0.8744
AT5G07250 ATRBL3 RHOMBOID-like protein 3 (.1.2) Lus10027436
[exp]
7.5 0.8637
AT5G51570 SPFH/Band 7/PHB domain-contain... Lus10038907
[exp]
8.4 0.8458
AT3G20300 Protein of unknown function (D... Lus10024308
[exp]
8.9 0.8591

Lus10023163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.