Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20280 436 / 2e-153 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015054 [exp] 586 / 0 AT2G20280 466 / 3e-165 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045600 [exp] 468 / 1e-165 AT2G20280 413 / 4e-144 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.006G132800 [exp] 467 / 2e-165 AT2G20280 438 / 3e-154 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.016G084100 [exp] 458 / 3e-162 AT2G20280 437 / 1e-153 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023164 pacid=23170368 polypeptide=Lus10023164 locus=Lus10023164.g ID=Lus10023164.BGIv1.0 annot-version=v1.0 ATGCCGCCGAAGCAGGCCTCGAAAGCAGACCTGGCGAAGAAGCAGAAGGTTGTAGAAGACAAGACGTTCGGATTGAAGAACAAGAACAAGAGCAAAAACG TCCAGAAATATGTTCAGACTCTCAAGCAGTCCGTGCAGCCAAAAGTTGACCCGAGCAAACTCGCTTCTAAGAAAAAGAAAGAGGAAGAGAAGGCCAAAGA GAAGGAGCTAAATGAGTTGTTTAAGATTGCTGTTAGCCAGCCTAAGGTTCCACCTGGAGTTGATCCAAAGTCCATATTGTGCGAGTTCTTCAAAGTGGGA CAATGCACAAAAGGGTTCAAATGCAAGTTCTCCCACGATCTTAATGTTCAGAGGAAAGGAGAAAAGATTGACATCTTCAGTGATAAGCGCGATGGTGATT GTTCTATTGGAAACACAATGGACGACTGGGATCAGGAAACTCTGGAAAAGGTTGTAGCATCAAAGAACAACGAGTATAACCAGAACAAACCTACTGATAT TGTATGCAAACACTTCCTGGATGCTGTGGAAAAGAAACAATACGGGTGGTTTTGGGTCTGCCCGAATGGTGGTAAAGAGTGCCAGTACCGCCATGCTCTT CCTCCAGGATATATCTTGAAATCTCAGATGAAGGCTCTACTAGAGGCCGAGTCTGATAAGATACCCATTGAGGAGGAGATTGAGAATCAGCGTGCGAAAG TAGCAACATCTACTCCCATGACTCCAGATTTGTTCATGCAATGGAAAAAGAAAAAGACAGACGAAAGGGATGCCAGTTTAGATGCACTAAGAGCAGATAG GGCTAAGAATGATAGAATGAGTGGCCGTGAGCTATTTCTGGCTGATGCTAGCTTGTTTGTGGATGATGCCGAGGCATATGAAAAGTATCAAAGAGCGGAA GAACCCGATGCTGCTGAAAAGAAGGTTGAACAAAAGTCTGATGCCCAGGGACCAAGCTCTTCATCACAAGCCAATGGAGAAGATGCTGAGAATGTCTTTG ATGATGATGATGACGAGGACGATGATGATGAGCTGGACTTGGATGAACTGAATGAGCTGGAAGCAAGCTTGGCAAAAACATCAATCAAAATCCAGGAGCC AGGTGATGTGAAACGAATTTGA
AA sequence Show only first row Show all	>Lus10023164 pacid=23170368 polypeptide=Lus10023164 locus=Lus10023164.g ID=Lus10023164.BGIv1.0 annot-version=v1.0 MPPKQASKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQTLKQSVQPKVDPSKLASKKKKEEEKAKEKELNELFKIAVSQPKVPPGVDPKSILCEFFKVG QCTKGFKCKFSHDLNVQRKGEKIDIFSDKRDGDCSIGNTMDDWDQETLEKVVASKNNEYNQNKPTDIVCKHFLDAVEKKQYGWFWVCPNGGKECQYRHAL PPGYILKSQMKALLEAESDKIPIEEEIENQRAKVATSTPMTPDLFMQWKKKKTDERDASLDALRADRAKNDRMSGRELFLADASLFVDDAEAYEKYQRAE EPDAAEKKVEQKSDAQGPSSSSQANGEDAENVFDDDDDEDDDDELDLDELNELEASLAKTSIKIQEPGDVKRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	0	1
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10037502 [exp]	1.0	0.8017
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10026925 [exp]	3.5	0.7312
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	3.7	0.7858
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011959 [exp]	3.9	0.7658
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10030350 [exp]	4.9	0.7567
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015054 [exp]	5.1	0.6960
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10012155 [exp]	5.2	0.7746
AT4G38500			Protein of unknown function (D...		Lus10025082 [exp]	6.5	0.7456
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10000062 [exp]	7.3	0.7355
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	8.0	0.7391

Compare expression of checked genes

Lus10023164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.