Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37050 1305 / 0 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G67720 846 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51805 449 / 3e-143 Leucine-rich repeat protein kinase family protein (.1.2) AT2G29000 446 / 3e-142 Leucine-rich repeat protein kinase family protein (.1) AT3G21340 446 / 4e-142 Leucine-rich repeat protein kinase family protein (.1) AT1G51860 442 / 1e-140 Leucine-rich repeat protein kinase family protein (.1) AT1G51880 442 / 1e-140 RHS6 root hair specific 6 (.1) AT2G28960 440 / 5e-140 Leucine-rich repeat protein kinase family protein (.1) AT1G51890 438 / 3e-139 Leucine-rich repeat protein kinase family protein (.1.2) AT5G59670 438 / 3e-139 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015057 [exp] 1751 / 0 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 1578 / 0 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 871 / 0 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 867 / 0 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025849 [exp] 427 / 5e-135 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019237 [exp] 414 / 3e-129 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025926 [exp] 382 / 1e-117 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 356 / 2e-108 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 317 / 1e-96 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084900 [exp] 1462 / 0 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 1449 / 0 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.010G052800 [exp] 888 / 0 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 871 / 0 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G004700 [exp] 422 / 2e-132 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094600 [exp] 420 / 4e-132 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094700 [exp] 417 / 8e-131 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.002G242700 [exp] 416 / 2e-130 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094300 [exp] 413 / 1e-129 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 345 / 2e-108 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10023166 pacid=23170275 polypeptide=Lus10023166 locus=Lus10023166.g ID=Lus10023166.BGIv1.0 annot-version=v1.0 ATGGCGACCAAGCTTTTCCTTCCTTTCTTCTTCCTCCTAGTCTTCTCTTTCGCTCCTCTTCCGCCCCAAGCCTCAGCTCAGAAGCCAGGGTTTGTGAGTT TGGATTGCGGCGGTAAAGGAAATTATACTGATGAAATCGGTTTGCAGTGGTCTTCTGATGATGATCTTATGTTCGGAGAAACCACAAACATAACCGTTGC AAATGAGACTAGGAGGCAATACACGACGCTGAGGCATTTCCCTGCTGATTCGAGGAAGTATTGTTATACATTGGGTGTCACAAGTAGGACGAGATATCTA TTGAGAGCAACTTTCCTATATGGTAACTTTGACAACAACAATGTATATCCAAAATTCGATATATCTGTGGGAGCAACTCGCTGGTCAACCATTGTCATTT CTGATGCTAATACCATAGAGTCCGCAGAGCTTATATTTCTGGCTTCAACTCCTAATATTAGTGTGTGCTTATCCAACGCTACAACTGGACAGCCTTTCAT ATCTACCCTTGAGCTTCGACAGTTCAATGGTTCGGTTTATTATACACCATCAGAAAACCAGTTTTACCTCAGTGTCTCTGCTAGAATCAATTTCGGCGCA GACAGTGCAGCTCCTGTCAGTAATGGATGGTTTGCTGTTGACCTTTCTTCTTCCTCTCGTCCTGATGGCAAGGAGAAGCGTATAAAAGGATGGTTATATT CTTTCAGGTATCCAGATGACCCATTTGATAGAATATGGGAATCCGACTTGCTGAAGAAAGCAAATTATCTCGTTGATGTTGCTGCCGGTACTCAGAAAAT ATCCACTAAAATGCCAATTGCTGTGAACAGAGATGAAATGCCTCCTGAGAAAGTGATGCAGACAGCTGTAGTTGGGACAAATGGTTCCCTAACCTATCGT TTGAACCTGGATGGTTTTCCTGCTGATGCTTGGGCTTTTACATATTTAGCTGAAATTGAAGATTTGCTTCCTCAAGAATCCAGAAAGTTTAGGCTAGTGC TTCCAGGAGACCCTGCTTTGAGCAAAGCCGTTGTTAATATCCAAGAGAATGCTCAAGGAAAATATCGTCTCTATGAACCGGGATATACCAATATATCCCT CCCCTTTGTTTTGTCTTTTAGATTTGGCAAGACTTCTGATTCAACCAAAGGGCCGCTCGTGAATGCCATGGAGATAAACAAGTACCTAGAGATCAATTAT GGATCTCCTGATGGAGGAGTTATCAATAAAGTGGTTTACCTAAATCCCTCTGCGGATTGGGCAAAAGAAGGGGGTGACCCATGTCTGCCGGTTCCTTGGT CTTGGGTCCAGTGTAACTCTGATGAACAACCCAGAATAACTAAAGTCTCTTTGTCAAATAAGAATTTGACTGGAAGTATTCCTTCAGACTTGACAAAGCT AACTGGCTTGGTTGAATTATGGCTTGATGGGAATTCACTCACTGGACAATTTCCTGATTTCAGTGGATGTCCAGACCTGGAGATCATTCATCTAGAGAAC AATCAGTTGACAGGCCAGCTGCCATCATATCTCGCAGATTTACCAAATCTCAGGGAACTGCACGTGCAGAATAATATGTTGTCTGGAACAGTACCATCGG GCCTCCTCAACAAGAATATAGAATTGAACTACTCGGGAAATATCAATCTTCATGAAGGGGGTGGAAAATCGAAACACATGAATGTTATCATTGGTGCATC AGTCGGTGCAGCTATTATCTTGCTAATAGCTTTAGCTATAGCTTGCATATTGATGCGGAGAGGGAAGAAAAAGCATCCTGATCAAGGTAAACTTCAAGGA TCCTTGCCTGTTCAGAAGGTACTTTCTGGCTTAGGTGATCCTTCTGCAGATGCTGCACATTACTTTACTTATACGGAGATTGTAGAAGCAACCAAAGATT TTGAGAGGAAGATAGGCTCTGGAGGTTTTGGTATTGTATACTACGGAAAAACGAAAGATGACAGGGAAATTGCTGTTAAAGTTCTAACCAGCAACTCATA TCAGGGAAAGCGAGAGTTTGCAAATGAGGTCACTCTTCTCTCAAGGATACACCACAGAAATTTGGTACAGTTTCTGGGTTTTTGTCAAGAAGAAGGCAAA AATATGCTTATTTATGAGTACATGCACAATGGGACTCTCAAAGAACATCTTTATGGGCCTCTAACCCATGGAAGGAGTATTAATTGGATCCAGCGCTTAG AGATCGCCGAGGATTCTGCAAAAGGGATTGAATATCTTCACACTGGCTGGGTCCCAGCCATTATCCACAGGGACCTGAAAACCAGCAATATTCTCCTCGA CAAACACATGAAAGCAAAGGTGTCAGATTTCGGCCTTTCGAAAATTGCGGCTGATGGAGCTTCTCATGTATCAAGCATTGTTCGCGGCACCGTTGGCTAT TTGGATCCAGAGTATTATATCTCTCAGCAGCTTACGGACAAGAGCGATGTTTATAGTTTCGGTGTGATTCTCCTGGAGCTGATGTCTGGTCAAGAGGCCA TATCCAACGAAAGCTTTGGCGTAAACTGCCGTAATATTGTTCAATGGGCAAAGCTACACATCGAGAGTGGGGATATCCAACGAATCATCGATCCCGTACT AGGAGAGGACTATGATATTCAGTCAATGTGGAAGATAGCAGAGAAGGCTCTGATGTGTGTCCAGCCACACGGCCACATGAGGCCATCGATTTCGGAAGTT CTGAAGGAGGTCCAAGACGCCATCTTGATTGAGAAGGAAGCCAAGGCAGTGAGAGAAGGCATATCGGATGACATGTCCAGAACTTCAGCTCAGTCTTCTC TGGTGTTGGGGGGATACATGGACATGGGTGGAGTCGATAATTCGCTTTCCTTGGACGATTCCATGGCTAAACCAACTGCAAGGTAG
AA sequence Show only first row Show all	>Lus10023166 pacid=23170275 polypeptide=Lus10023166 locus=Lus10023166.g ID=Lus10023166.BGIv1.0 annot-version=v1.0 MATKLFLPFFFLLVFSFAPLPPQASAQKPGFVSLDCGGKGNYTDEIGLQWSSDDDLMFGETTNITVANETRRQYTTLRHFPADSRKYCYTLGVTSRTRYL LRATFLYGNFDNNNVYPKFDISVGATRWSTIVISDANTIESAELIFLASTPNISVCLSNATTGQPFISTLELRQFNGSVYYTPSENQFYLSVSARINFGA DSAAPVSNGWFAVDLSSSSRPDGKEKRIKGWLYSFRYPDDPFDRIWESDLLKKANYLVDVAAGTQKISTKMPIAVNRDEMPPEKVMQTAVVGTNGSLTYR LNLDGFPADAWAFTYLAEIEDLLPQESRKFRLVLPGDPALSKAVVNIQENAQGKYRLYEPGYTNISLPFVLSFRFGKTSDSTKGPLVNAMEINKYLEINY GSPDGGVINKVVYLNPSADWAKEGGDPCLPVPWSWVQCNSDEQPRITKVSLSNKNLTGSIPSDLTKLTGLVELWLDGNSLTGQFPDFSGCPDLEIIHLEN NQLTGQLPSYLADLPNLRELHVQNNMLSGTVPSGLLNKNIELNYSGNINLHEGGGKSKHMNVIIGASVGAAIILLIALAIACILMRRGKKKHPDQGKLQG SLPVQKVLSGLGDPSADAAHYFTYTEIVEATKDFERKIGSGGFGIVYYGKTKDDREIAVKVLTSNSYQGKREFANEVTLLSRIHHRNLVQFLGFCQEEGK NMLIYEYMHNGTLKEHLYGPLTHGRSINWIQRLEIAEDSAKGIEYLHTGWVPAIIHRDLKTSNILLDKHMKAKVSDFGLSKIAADGASHVSSIVRGTVGY LDPEYYISQQLTDKSDVYSFGVILLELMSGQEAISNESFGVNCRNIVQWAKLHIESGDIQRIIDPVLGEDYDIQSMWKIAEKALMCVQPHGHMRPSISEV LKEVQDAILIEKEAKAVREGISDDMSRTSAQSSLVLGGYMDMGGVDNSLSLDDSMAKPTAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	0	1
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	2.0	0.8620
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039414 [exp]	2.0	0.8906
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	3.2	0.8871
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	5.2	0.8687
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10037719 [exp]	5.7	0.8173
AT2G42900			Plant basic secretory protein ...		Lus10031462 [exp]	7.9	0.8429
AT5G27950			P-loop containing nucleoside t...		Lus10018999 [exp]	7.9	0.8363
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10008459 [exp]	10.0	0.8128
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10019241 [exp]	10.6	0.7755
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10034045 [exp]	11.8	0.8541

Compare expression of checked genes

Lus10023166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.