Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09650 256 / 1e-80 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G69290 62 / 7e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 59 / 6e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68980 57 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G03100 54 / 3e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 51 / 2e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G18475 51 / 2e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63630 49 / 2e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62720 51 / 3e-07 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G17140 51 / 3e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015059 [exp] 314 / 5e-102 AT3G09650 969 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037077 [exp] 62 / 6e-11 AT1G69290 827 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042362 [exp] 57 / 4e-09 AT1G02420 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 54 / 3e-08 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028942 [exp] 49 / 5e-08 AT5G01110 118 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026306 [exp] 52 / 8e-08 AT1G02420 522 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020775 [exp] 51 / 2e-07 AT1G03100 961 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 51 / 2e-07 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009201 [exp] 51 / 2e-07 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085300 [exp] 266 / 2e-84 AT3G09650 961 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G095800 [exp] 67 / 2e-12 AT1G69290 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 57 / 2e-09 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G212400 [exp] 56 / 7e-09 AT1G03100 1044 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 55 / 1e-08 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.008G108300 [exp] 54 / 3e-08 AT3G16890 771 / 0.0 pentatricopeptide (PPR) domain protein 40 (.1) Potri.017G091600 [exp] 53 / 6e-08 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G150100 [exp] 52 / 2e-07 AT1G62930 442 / 8e-149 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 51 / 2e-07 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 51 / 3e-07 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10023168 pacid=23170278 polypeptide=Lus10023168 locus=Lus10023168.g ID=Lus10023168.BGIv1.0 annot-version=v1.0 ATGCTGAAAGATTCGCGGGTCAAAGTTGATTTGATTGCCTGGAATATGTTAGTTGAAGGGTATTGTAAGTTGGGTTTGGTTCAGGAAGCGAAGAGAGTTG TAGAGAAGATGAAGGAGAATGGGTTTTACCATGATGTGGCTACTTATGGAAGTCTAGCAAATGGAATAGCATTGGCTAAAAAACCAGGGGAAGCTCTTCT GTTATGGAAGGAAGTAAAAGATAGATGCGAGATGAAATGGAAAGGAGAGAGCTCCGAGTCCGACCCTGATTCGCCTCCTGTCCCACCTTTGAGGCCCGAT GACGAGCTGTTAGATACACTGGCTGATATCTGCGTCAGAGGTGCTTTCTTCCAGAAGGCTTTGGAGATCGTTGCCTGCATGGAAGAATATAGAATTCCAC CAAACAAGTCAAAGTACAAGAAGATTTATGTGGAGATGCATTCCAGGATGTTTACCAGTAAACATGCGTCGCAAGCGAGGCAAGATCGGAGGAAAGAGAG GAAGAGAGCAGCCGAGGCTTTCAAGTTTTGGTTAGGTTTGCCTAATGAATATTATGGAAGCGAATGGCGACTCGATCCCTTGGACACCGAGATGGATGTC AGCACAAAGGGATTAGAGAGGCTGGCAGGAACAGTTGTTTTGCAAGCAAATGCAGCAATAGTCCTTGTATGCAAACACAAAGAACTTGATCGAACTTACG AGTAG
AA sequence Show only first row Show all	>Lus10023168 pacid=23170278 polypeptide=Lus10023168 locus=Lus10023168.g ID=Lus10023168.BGIv1.0 annot-version=v1.0 MLKDSRVKVDLIAWNMLVEGYCKLGLVQEAKRVVEKMKENGFYHDVATYGSLANGIALAKKPGEALLLWKEVKDRCEMKWKGESSESDPDSPPVPPLRPD DELLDTLADICVRGAFFQKALEIVACMEEYRIPPNKSKYKKIYVEMHSRMFTSKHASQARQDRRKERKRAAEAFKFWLGLPNEYYGSEWRLDPLDTEMDV STKGLERLAGTVVLQANAAIVLVCKHKELDRTYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10023168 [exp]	0	1
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	1.7	0.9267
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	3.2	0.9148
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	4.2	0.9108
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10034022 [exp]	5.3	0.8597
AT5G44000			Glutathione S-transferase fami...		Lus10027233 [exp]	5.3	0.8796
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000035 [exp]	5.3	0.9088
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	7.5	0.8947
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10001866 [exp]	8.2	0.8763
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	9.8	0.8826
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	10.5	0.9008

Compare expression of checked genes

Lus10023168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.