Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09660 934 / 0 MCM8 minichromosome maintenance 8 (.1) AT1G44900 265 / 8e-76 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G16440 263 / 1e-75 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G46280 248 / 1e-70 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT4G02060 244 / 1e-69 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G07690 239 / 4e-68 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G44635 236 / 4e-66 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT2G14050 209 / 1e-57 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015060 [exp] 728 / 0 AT3G09660 651 / 0.0 minichromosome maintenance 8 (.1) Lus10028795 [exp] 257 / 1e-73 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10009052 [exp] 258 / 3e-72 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10017491 [exp] 253 / 3e-72 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10015267 [exp] 249 / 2e-69 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10009683 [exp] 248 / 1e-68 AT1G44900 963 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10040017 [exp] 236 / 3e-67 AT2G07690 1060 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10001452 [exp] 236 / 1e-66 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10002427 [exp] 235 / 2e-66 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131900 [exp] 1127 / 0 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.009G121500 [exp] 268 / 2e-77 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.018G112800 [exp] 251 / 2e-72 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.001G070500 [exp] 253 / 9e-72 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G188700 [exp] 248 / 6e-71 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 247 / 2e-70 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.014G121000 [exp] 240 / 2e-68 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.001G074000 [exp] 236 / 5e-66 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.019G014403 [exp] 216 / 6e-60 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 69 / 3e-14 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10023169 pacid=23170379 polypeptide=Lus10023169 locus=Lus10023169.g ID=Lus10023169.BGIv1.0 annot-version=v1.0 ATGTACGGATATGACGGAGAGAGCGCGGCGGTGACGAAACATCGGCCCCGTGGCTCGATGAGCTACACCGAAGATAATATCGGAGGGATTCTGGCTATGT ATTTCCCTTCAAACGATGTCACTGTTGAACAAGGCGATGAATTGAAAATGTTGACTTCCGAGCTCGTTTACTTCTTCTCCACTCCTCCCGGCCGAGACCT TGTCGCTCAGCAGGTGAAGGATGAAAATGGCGCAGTGTTCTTACCCGTGGATTTCCAACTGTTCCGTAAGATATGTACTGTCCATGAATTTTATGCCGCT GTCGAAGAAAACCCTAGAGTGGCTATCTCATGTATGTCTGCTGCTGTTCACAAGGTGATTCAGAGTGAATGGGAGACTAACTTTCTGGAGGATGGGATGA AGATCAACATCCGTCTTTACAACCATCCTGAATCAATGATTGCTTTGAAGAACCTAAAAGCGGCTTATATCGACAAGCTTGTATCTATTCGTGGGACAGT GGTGAAGGTTAGCACGGTGAAGCCTCTGGTTGTCCAGATGAACTTCGACTGTGAAAAGTGTAAATCCAACATCTTACGTGTATTTCCAGATGGAAAGTTT TCACCACCGTATGTATGTAATTTAAATGGATGCAAGAGCAAAACTTTCAAACCGCTCAGGTCTTCGGCTAAGGCTATAGATTTTCAGAAAATTCGGTGGC TAACTGCATGGTCTAGGCTGCAGGAGCTGCTAAGATCTCAAGATCATGAAGAAGGCCGAGTACCTCGAACTGTAGAATGTGAGCTCACGGAGGATCTTGT TGATGCATGTATTCCTGGAGATGTTGTCACTGTCACTGGGATTATAAGGACAATTGATAACCATGCGGATATCGGAGGAGGAAAGTCGAAAGGCAAAAGT CAAGGACTATATTATCTGTACATAGAAGTTGTGTCCATGAAGAACTCCAAGTCGCAATCTACTTCTGATGAATTGCAAGATTCCGTGTCAAACGCTAGAG CTACAGAGCTGTCTGACTTGTTTTCATTTTCTTCAAAAGACCTGGAATTTGTGGTGAAGTGTTCTCAAGAATATGGCTCCGACATATTCAGACAATTACT TCATTCTATATGTCCATCTATTTTCGGACATGAGCTTGTTAAAGCGGGAATTACACTGTCGCTTTTTGGAGGTGTTCGTAAGCATACAATGGATCAGAAT AAGGTCCCTGTCAGGGGAGACATCCATGTCATAATTGTTGGTGATCCTGGACTGGGCAAGAGTCAATTACTACAAGCAGCAGCAGCTGTTTCTCCACGTG GTATTTACGTGTGTGGCAATGCAACAACCAATGCTGGCCTCACTGTTGCTGTTGTAAAAGACTCAATGACAAACGACTATTCTTTTGAGGCTGGGGCAAT GGTGCTTGCCGACAGTGGTCTGTGTTGTATTGACGAATTTGATAAATTGTCTGCTGAACATCAGGCCCTTCTGGAAGCTATGGAGCAACAATGTGTGTCT GTGGCAAAGGCTGGACTTCTGGCGAGCTTGTCAGCAAGGACTTCTGTTTTAGCTGCAGCAAATCCTGTTGGCGGTCATTATAACCGAGCAAAGACGGTGA ATGAGAACCTAAGGATGAGTGCTGCTCTCTTGACACGATTTGATCTGGTGTTCATATTACTTGATAAACATGATGAAGAACTTGACAAGCGCCTGTCAGA TCACATAATATCGCTTCATGGTGGAAGTAAGGAGCCTTCTTCTCCAGGAAAAAGGAGACGTACAGATTTAGCTTTAACGAGTAGAACGACAGAGACAAGT GTAAAAAGTAGTTCATTAGCTTCAAGGTTGAGACTTTGCCCGCACAAGGATGCTGAATTCTCTCCTTTGCCCGCTTCACTCCTTCGGAAATACATTGCCT ATGCAAGAACTTACGTCTTCCCCAGGATGACAAAGCCAGCAGCTGAAATTCTGCAAAAATTCTATTTGCGACTGAGGGACGGCAACACATCAGGTGATGG CATACCCATAACAGCAAGGCAGTTGGAAAGTCTGGTAAGACTAGCTGAAGCTCGAGCTCGGCTTGAACTGAGAGAAGAAATAACATCCCAGGATGCAATG GATGTTGTGGAAATAATGAAAGAGTCTCTGTATGAAAAATGTCTTGATGATAATGGCGTTGTGGATTTCGGTCGGAGTGGTGGAATGAGTCAGCCCAAGG AAGCAAAACGGTTTCTAAGCGCCCTCAATAAGCAGTCCGAGTTGCTGCAAAAAGATACCTTTTCAATCGCAGAAATATACAGTTTGGCGGACAGGATTGC GCTAAGAGTTCCTGATATCGACACGTTACTGGAAAATTTAAACAGTGTTGGCTACATCATCAAAAAGGGACCGCAAATGTATCAGGTGCTAACATCTTCC TACTCACGGAGTCAATCATCAAGGCCAAGATGCTGA
AA sequence Show only first row Show all	>Lus10023169 pacid=23170379 polypeptide=Lus10023169 locus=Lus10023169.g ID=Lus10023169.BGIv1.0 annot-version=v1.0 MYGYDGESAAVTKHRPRGSMSYTEDNIGGILAMYFPSNDVTVEQGDELKMLTSELVYFFSTPPGRDLVAQQVKDENGAVFLPVDFQLFRKICTVHEFYAA VEENPRVAISCMSAAVHKVIQSEWETNFLEDGMKINIRLYNHPESMIALKNLKAAYIDKLVSIRGTVVKVSTVKPLVVQMNFDCEKCKSNILRVFPDGKF SPPYVCNLNGCKSKTFKPLRSSAKAIDFQKIRWLTAWSRLQELLRSQDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRTIDNHADIGGGKSKGKS QGLYYLYIEVVSMKNSKSQSTSDELQDSVSNARATELSDLFSFSSKDLEFVVKCSQEYGSDIFRQLLHSICPSIFGHELVKAGITLSLFGGVRKHTMDQN KVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTNAGLTVAVVKDSMTNDYSFEAGAMVLADSGLCCIDEFDKLSAEHQALLEAMEQQCVS VAKAGLLASLSARTSVLAAANPVGGHYNRAKTVNENLRMSAALLTRFDLVFILLDKHDEELDKRLSDHIISLHGGSKEPSSPGKRRRTDLALTSRTTETS VKSSSLASRLRLCPHKDAEFSPLPASLLRKYIAYARTYVFPRMTKPAAEILQKFYLRLRDGNTSGDGIPITARQLESLVRLAEARARLELREEITSQDAM DVVEIMKESLYEKCLDDNGVVDFGRSGGMSQPKEAKRFLSALNKQSELLQKDTFSIAEIYSLADRIALRVPDIDTLLENLNSVGYIIKKGPQMYQVLTSS YSRSQSSRPRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10023169 [exp]	0	1
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	3.9	0.8719
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10020893 [exp]	9.6	0.8330
AT3G14470			NB-ARC domain-containing disea...		Lus10039549 [exp]	13.0	0.8087
AT3G57570			ARM repeat superfamily protein...		Lus10042364 [exp]	13.6	0.8311
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	15.7	0.8205
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10018928 [exp]	15.7	0.7994
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	18.1	0.8211
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	19.7	0.8265
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	22.4	0.8225
AT3G32940			RNA-binding KH domain-containi...		Lus10013751 [exp]	25.5	0.7950

Compare expression of checked genes

Lus10023169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.