Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53320 132 / 2e-32 unknown protein AT2G37070 99 / 1e-21 unknown protein AT5G60150 60 / 5e-09 unknown protein AT2G38890 47 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026478 [exp] 369 / 9e-118 AT3G53320 56 / 8e-08 unknown protein Lus10019909 [exp] 240 / 9e-70 AT3G53320 93 / 1e-19 unknown protein Lus10023488 [exp] 51 / 3e-06 AT2G38890 100 / 3e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085600 [exp] 277 / 1e-80 AT3G53320 174 / 4e-46 unknown protein Potri.006G131650 [exp] 236 / 6e-66 AT3G53320 146 / 1e-36 unknown protein Potri.008G044500 [exp] 84 / 1e-16 AT2G38890 107 / 1e-25 unknown protein Potri.010G217000 [exp] 74 / 3e-13 AT2G38890 92 / 2e-20 unknown protein Potri.005G131500 [exp] 63 / 6e-10 AT5G60150 106 / 9e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023170 pacid=23170430 polypeptide=Lus10023170 locus=Lus10023170.g ID=Lus10023170.BGIv1.0 annot-version=v1.0 ATGAGCGAGTCCGGTGAGAGTTTCGCCCTCCAAGATAATAGGCTCGGCCTCATCGACGTCTCCTTTGAGGATGATTGTCTATATGCTACTTCCTCTCCTC CTCGTGACTTCCAGTTCTCAGATGATTTGTTGGACAATGGAAACGCTCCGTCGTTGAACCTTCTTGATTCCCAGCGTCTTGAAAACTTGGGTGGTGGAGT TGATGACAGCGGACATATATCTCAGCCAGTTGAATCACCGCAACCAGAAGAGTCGAAACAAAATGTGAAGTATAACTTGCGTAAAAGTTTAGCATGGGAC AGTGCGTTCTTCACGAGTGCAGGTGTTCTGGAACCAGATGAGTTATCTAGCATGATCGGACAGACTGAGAAAAGAAAGATGTTACCTGGAATTAGAGAGG AGTTAGAGAGGTCGACAGATTCATTATCTACCTTAGCGAGTGATGGTTTGACTCTGGAGAATCTTGAGGATGACCTGTTCGGTGATGTCAGAGCATCAAT CCAGAAATCAACTAGATCTTCCACCGTTGCAGATTCTATGGTCAAGGCAGGTATTAGAAAAGGACCAGCCACCGCTGCAAGCCATGCAAAGCAACCTCCA AAAAAAGCAGAGGAAACTTCTTTAGACCAGCCAAAAGCTAAAGCTGCTCCAAAGAAGGCAGATGCTGTTATTCCAGGAGCTCGCAGAATGCTAAAGCCAG GATCATCACAATTTCTTCGTACCAAAGGAGAATCAGAATCATTGCCAAATCCCCCTAAGATATCTGGCCGAGTTAGCATCTCAACAGCAGCCAAGAGAGC TCTGTTGAGCAACAGCCGTGTCAAAGTGGAAAAGGAGATGGGAAAAGCTTCAGCTAGTACTTCAGCAAATAAAGATTCGACAGGATCCGCTGCTGTAGGA AGAGTGAAAATCCCAACTCCTGGTGGTTTGAGGAGTACTGTGTCGAAGCTACCGCCGCCTATACGTTCTTCATCAAGTTCAACAAAGACAGAGTCAATAG CCTCTTCTTTTGATTGTTCTGAAAGCATTTCGTCAGATGGGAGCAGCAAATCTTCTTTGCAATCTGTTAGACAAAAAGTAGTCAATGGGGCTGGTTCTCT TCCTTCTTCAATCCTGATAGCCAAAGCCACATCAAGAATTGGTTCAAGAGGTAAAACTCTTTCAACGAACGCACGCAGGTCGCCCCATCTTAAGTCTGTA GCCAAGCTTCCTCCAAATATTTCTCCTGCGAGCTCTGTCAGTGAATGGTCCTCAGAGTCCTTGTGCCTGTCACCGACTTCAACCCTTAATAAGGAGTCTA ATTGTTCAAGATCTAGCATTGACACAGCCTCTTGTAGAGATCTATATGAAGATGACAATAGTTCTCAAGTTTCGGATTCTCTGAGCCATTCTAGTGAAAA CAGTGGACTTGGTGCAGATTCAGCTAAGCCCTCAGGCCTCCGGTTACCATCACCTAAAATTGGTTTCTTCGATGGGGCAAGATCAGGCATACGGAATCCA AACGGGAATGTGCAACCACAACTAGGGGCGTCCAGTGAATTACCTAGACCAGGGGGACCCAGTGGATTACCAAGACCAGGAGCACAAGGAAAGACGGCAA AGCTTCAAAATGGTAAAAATGAAACGCTAACCAGAAGTAGCAAGGTTAGCACTCAACAACAGCCTTTGAACTTCAAGTTAAAGTCTCCATTGTCTATCCA GGAGCCATTACCAAAGGTCGGTAGTGGCTTAAGAAATGTGAAGCGCTCTCCAAGCATATCTACCAGGGTGCAAATTAGTAAGACATCCCCTGGAAGCAGT GTGGAGAAGAACCCAAAGCCTGTGAAGGTCATGCCGATAGATGAAAAAAGTACAACCGACATGTCTCCTTTGGAAGAAAATCATGGTGTAGAGAATGATA AAGTTGTGACTAGTGAGCGTAATGACAAGAAGTCCAATCCTACCAGTGAAGGTGGTGATGTTGGCGGTGATACTAGCTTGCCAGAAAAGAGTCCTGGTCA GAAGGAAGAAGATTTGATGAAAGAGTTGGAACCTTTTGCGAAAGCTAATTCAGTTCATACTGAGAATGAAGATGTTCCGGAGCTACCAACGATCGAGAGA ACAAAAGGGTCGGGGGTGGAGGGTTGA
AA sequence Show only first row Show all	>Lus10023170 pacid=23170430 polypeptide=Lus10023170 locus=Lus10023170.g ID=Lus10023170.BGIv1.0 annot-version=v1.0 MSESGESFALQDNRLGLIDVSFEDDCLYATSSPPRDFQFSDDLLDNGNAPSLNLLDSQRLENLGGGVDDSGHISQPVESPQPEESKQNVKYNLRKSLAWD SAFFTSAGVLEPDELSSMIGQTEKRKMLPGIREELERSTDSLSTLASDGLTLENLEDDLFGDVRASIQKSTRSSTVADSMVKAGIRKGPATAASHAKQPP KKAEETSLDQPKAKAAPKKADAVIPGARRMLKPGSSQFLRTKGESESLPNPPKISGRVSISTAAKRALLSNSRVKVEKEMGKASASTSANKDSTGSAAVG RVKIPTPGGLRSTVSKLPPPIRSSSSSTKTESIASSFDCSESISSDGSSKSSLQSVRQKVVNGAGSLPSSILIAKATSRIGSRGKTLSTNARRSPHLKSV AKLPPNISPASSVSEWSSESLCLSPTSTLNKESNCSRSSIDTASCRDLYEDDNSSQVSDSLSHSSENSGLGADSAKPSGLRLPSPKIGFFDGARSGIRNP NGNVQPQLGASSELPRPGGPSGLPRPGAQGKTAKLQNGKNETLTRSSKVSTQQQPLNFKLKSPLSIQEPLPKVGSGLRNVKRSPSISTRVQISKTSPGSS VEKNPKPVKVMPIDEKSTTDMSPLEENHGVENDKVVTSERNDKKSNPTSEGGDVGGDTSLPEKSPGQKEEDLMKELEPFAKANSVHTENEDVPELPTIER TKGSGVEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53320			unknown protein		Lus10023170 [exp]	0	1
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	1.7	0.8999
AT4G39860			unknown protein		Lus10041695 [exp]	2.4	0.8813
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	2.6	0.9083
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10007989 [exp]	3.9	0.8821
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10033768 [exp]	6.6	0.8393
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	7.2	0.9048
AT3G53320			unknown protein		Lus10019909 [exp]	8.7	0.8592
AT4G16180			unknown protein		Lus10017062 [exp]	12.3	0.8911
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	12.6	0.8486
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	14.8	0.8713

Compare expression of checked genes

Lus10023170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.