Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02960 268 / 3e-94 Ribosomal protein S12/S23 family protein (.1) AT3G09680 265 / 5e-93 Ribosomal protein S12/S23 family protein (.1) ATCG00905 49 / 1e-08 ATCG00905.1, RPS12C ribosomal protein S12C (.1) ATCG01230 49 / 1e-08 ATCG01230.1, RPS12B ribosomal protein S12B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026479 [exp] 286 / 3e-101 AT5G02960 268 / 3e-94 Ribosomal protein S12/S23 family protein (.1) Lus10019910 [exp] 286 / 3e-101 AT5G02960 268 / 3e-94 Ribosomal protein S12/S23 family protein (.1) Lus10015063 [exp] 243 / 2e-79 AT5G14180 224 / 1e-71 Myzus persicae-induced lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085800 [exp] 281 / 2e-99 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1) Potri.008G044400 [exp] 281 / 2e-99 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1) Potri.010G217100 [exp] 281 / 2e-99 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1) Potri.006G131500 [exp] 281 / 2e-99 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00164 [flax] [poplar] Ribosom_S12_S23 Ribosomal protein S12/S23
Representative CDS sequence Show only first row Show all	>Lus10023172 pacid=23170398 polypeptide=Lus10023172 locus=Lus10023172.g ID=Lus10023172.BGIv1.0 annot-version=v1.0 ATGGGGAAAACACGTGGAATGGGAGCAGCTCGCAAGCTGAAGGACCATCGTAGGAGGCAAAGGTGGGCTGACAAAGCTTACAAGAAGTCTAACTTGGGAA ACGAGTGGAAGAAGCCCTTCGCTGGTTCTTCTCATGCTAAAGGCATTGTGCTCGAGAAGATTGGTATTGAAGCCAAGCAGCCTAACTCTGCTATCAGAAA GTGTGCCCGAGTCCAGCTTATCAAGAACGGAAAGAAGATTGCAGCCTTTGTCCCCAATGATGGTTGCTTGAATTACATTGAGGAGAACGATGAGGTTCTT ATTGCTGGATTCGGTAGGAAGGGACACGCTGTGGGTGATATTCCCGGAGTCCGTTTCAAGGTGGTGAAGGTATCAGGTGTATCCCTCTTGGCTTTGTTCA AGGAGAAGAAGGAGAAGCCAAGATCTTAA
AA sequence Show only first row Show all	>Lus10023172 pacid=23170398 polypeptide=Lus10023172 locus=Lus10023172.g ID=Lus10023172.BGIv1.0 annot-version=v1.0 MGKTRGMGAARKLKDHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	0	1
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10019910 [exp]	2.0	0.8980
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	2.4	0.9054
AT2G18110			Translation elongation factor...		Lus10013555 [exp]	3.7	0.8293
AT2G20450			Ribosomal protein L14 (.1)		Lus10024918 [exp]	3.9	0.8902
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10038012 [exp]	4.2	0.8609
AT5G65860			ankyrin repeat family protein ...		Lus10032850 [exp]	4.6	0.8703
AT5G27470			seryl-tRNA synthetase / serine...		Lus10017409 [exp]	5.5	0.8582
AT2G19740			Ribosomal protein L31e family ...		Lus10042028 [exp]	6.3	0.8829
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10032198 [exp]	6.6	0.8487
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	7.7	0.8825

Compare expression of checked genes

Lus10023172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.