Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37080 249 / 5e-76 RIP3 ROP interactive partner 3 (.1) AT3G53350 225 / 6e-69 RIP4 ROP interactive partner 4 (.1.2.3) AT5G60210 192 / 6e-55 RIP5 ROP interactive partner 5 (.1.2) AT4G27595 52 / 6e-07 Plant protein of unknown function (DUF827) (.1) AT1G65010 52 / 6e-07 Plant protein of unknown function (DUF827) (.1) AT1G17140 49 / 4e-06 RIP1, ICR1 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2) AT5G16730 50 / 5e-06 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026482 [exp] 402 / 1e-135 AT2G37080 435 / 7e-147 ROP interactive partner 3 (.1) Lus10015064 [exp] 306 / 3e-100 AT2G37080 155 / 4e-42 ROP interactive partner 3 (.1) Lus10019912 [exp] 202 / 5e-60 AT2G37080 264 / 7e-83 ROP interactive partner 3 (.1) Lus10011643 [exp] 79 / 2e-16 AT5G60210 152 / 6e-43 ROP interactive partner 5 (.1.2) Lus10020373 [exp] 47 / 4e-05 AT5G16730 610 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10013708 [exp] 42 / 0.0007 AT1G17140 229 / 8e-73 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085900 [exp] 401 / 4e-134 AT2G37080 474 / 2e-161 ROP interactive partner 3 (.1) Potri.006G131400 [exp] 377 / 7e-125 AT2G37080 473 / 1e-160 ROP interactive partner 3 (.1) Potri.019G047600 [exp] 79 / 4e-15 AT5G16730 608 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.013G079000 [exp] 70 / 2e-12 AT5G16730 619 / 0.0 Plant protein of unknown function (DUF827) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023173 pacid=23170331 polypeptide=Lus10023173 locus=Lus10023173.g ID=Lus10023173.BGIv1.0 annot-version=v1.0 ATGCAGACACCAAAAGCCAAAGCTGCCTCCTTGGAGCCACCTCCGCGAAAATCTCCGGCTGGAACTCCACGAATAGCTCGTCAACTGCAGCTCCCGGTAG CTGATTCTAATCGAAACTCGTCCATGATTCCCACAAGCAAGTCTCGAAGCCCTAAGGTTCCTGAACGCAAGTCACCAAGAAGTCTTGTATCTGAGCAGAA GCAACCTAGTAGAGTTGCTGACCTTGAAACAAAGCTAGCTCAGCTGCAGGAGGATTATAAAAAGACCAAAGATCAATTAAATGTGTCAGAGTCATGTAAG CGGCAGGCTCAAAAGGAAGCTCAAGACACAAAGAAGCAGCTCGCTGAGCTGACTGATTGTGACGATACCAGGATCGAAGAGCTGTGTAAGATCTCCCACG ACCGAGATAGAGTTTGGCAATCTGAACTTGAATCCATCCAGAAGCAGCATGCGATTGATTCAGCTGCCTTGTCAACTGCCATGAATGAAATCAAAAGGCT GAAGAATCAGCTGCACGTTGTGTCTGAATCTGAAGCAACTCAAATGGAGCATGCCGAATCAGCACACGCCGAGTTACAAGGGCTGAGAATCGAACTGACA GAAACCCTTTCCCTTGTGGAGAGAATGAAATGTGAAGTGAGTGATTGCAGAAGGTCTGAAGCTGAGGCAATGGAAGCTGTTAGTGAGACTCAAAGGAAAT TAGAAGCAAGTAATGAGAGTGGTGATAAGTCTCGTCTGGACTGTAACGAAGCGATGCAAGCTTGCAAACGGCTGGCATTGGAGTTGGAGCAGTCAAGAGC TGAAATGAGCCAACTGAGATCTGATCTTGAAGTATCCAAGGAAAAATACCAGGAGGAATACATCCAGAGCACACTTGAGATTAGACGTGCTTACGAACAA GTTGAACAGGCGAAACTCGAGGCAAGCCGGAAAGAGGCACAACTTAGGAAGGCCAGGGCTAAAATTGATGAACTCAATGAAGCATTGAGGTCAAATAAGA TTGAGGAAAGTAAGAATTTGGCTAGTGAAAAGCAATATGAAGAAGTTGAAATGAAGTTGAAGAAGGTGAAAGCAAGCCTGTTGAAGAAGGAGAGTGAGGT TCATAATTTAGCAGAAGAAAATGAGGCGCTGAAGAAGGAAATGAAGAAAGGAGAAGAGGCTGTGAATGCAGAGATGGAGAGTGAATTGAGGAGGGTGAAG GTGCAGGCTGATCAATGGAGGAAAGCTGCTGAGGCAGCTGCATCCATGCTAGATAATCATCACAATAATAATAATAATAATAATGATGTGAGGTATACCA CCATGGCTGGGAGTTTGGATTCGCCTTTTTCGGAAGACATGGATGACTACGACGAGGATGATGAAGATGAGTCTACAAAGAAGAAGAATGGGAATATGCT GAAAAAGATAGGTGTTGTGTTGTGGAAGAAGGGTCATAAGTAA
AA sequence Show only first row Show all	>Lus10023173 pacid=23170331 polypeptide=Lus10023173 locus=Lus10023173.g ID=Lus10023173.BGIv1.0 annot-version=v1.0 MQTPKAKAASLEPPPRKSPAGTPRIARQLQLPVADSNRNSSMIPTSKSRSPKVPERKSPRSLVSEQKQPSRVADLETKLAQLQEDYKKTKDQLNVSESCK RQAQKEAQDTKKQLAELTDCDDTRIEELCKISHDRDRVWQSELESIQKQHAIDSAALSTAMNEIKRLKNQLHVVSESEATQMEHAESAHAELQGLRIELT ETLSLVERMKCEVSDCRRSEAEAMEAVSETQRKLEASNESGDKSRLDCNEAMQACKRLALELEQSRAEMSQLRSDLEVSKEKYQEEYIQSTLEIRRAYEQ VEQAKLEASRKEAQLRKARAKIDELNEALRSNKIEESKNLASEKQYEEVEMKLKKVKASLLKKESEVHNLAEENEALKKEMKKGEEAVNAEMESELRRVK VQADQWRKAAEAAASMLDNHHNNNNNNNDVRYTTMAGSLDSPFSEDMDDYDEDDEDESTKKKNGNMLKKIGVVLWKKGHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	2.2	0.9848
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	4.7	0.9798
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	6.0	0.9734
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	6.5	0.9642
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	6.5	0.9777
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	6.9	0.9717
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	9.2	0.9728
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10015646 [exp]	9.2	0.9615
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10023152 [exp]	9.9	0.9710
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10027761 [exp]	10.4	0.9624

Compare expression of checked genes

Lus10023173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.