Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37110 296 / 1e-101 PLAC8 family protein (.1) AT2G40935 68 / 9e-14 PLAC8 family protein (.1.2.3) AT1G68630 44 / 2e-05 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015072 [exp] 435 / 2e-156 AT2G37110 306 / 4e-106 PLAC8 family protein (.1) Lus10019922 [exp] 362 / 2e-127 AT2G37110 303 / 3e-104 PLAC8 family protein (.1) Lus10026492 [exp] 320 / 6e-111 AT2G37110 290 / 3e-99 PLAC8 family protein (.1) Lus10005257 [exp] 61 / 3e-11 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G087200 [exp] 313 / 2e-108 AT2G37110 309 / 4e-107 PLAC8 family protein (.1) Potri.006G130300 [exp] 312 / 5e-108 AT2G37110 320 / 1e-111 PLAC8 family protein (.1) Potri.006G024900 [exp] 66 / 4e-13 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10023176 pacid=23170400 polypeptide=Lus10023176 locus=Lus10023176.g ID=Lus10023176.BGIv1.0 annot-version=v1.0 ATGGCTGACATCAACAACAAAAACACCGCAAACACCCCCAGCTCCTGCAATGAAGATCGCGCGGAATCCAGCCCTCTCTTGGACAAGAAAATGGATGAAC AAGCATCCGACGCCAAGACCGCTGCATCGAAATCGGCGGTGCGTGGATGGACGGCTAATGGAGTGCCGTTAGGTCACGGAAACGTGGTGGGTCAGCCTAT GAACCGTGCGCAATGGGATTCCGGGATCTGTGCTTGCCTTGGCCGCAACGATGAATTTTGCAGCAGCGATCTTGAAGTCTGTCTTATTGGAAGTGTTGCA CCTTGTGTGTTGCATGGAAGCAATGCTGAACGATTGGGATCCACCCCTGGAACATTTACAAACCATTGTTTGCCTTACACTGGCCTCTACTTGATTGGTA ATTCCTTGTTCGGTTGGAACTGCCTTGCTCCATGGTTTTCTTACCCTGGCCGAACTGCTATGCGCCGCAGGTTTAATCTCGAGGCAAAGGTTGAGCCTCC TTATCTCAAGACACTGATTTTCTTATGGAAATGTTTTGTTATTGGGCTGGGACAGGGAAGCTGCGAGGCACTTAATAGGTCATGTGGATGCTGTGGGAGC TGCTTGGAAGACGAGTTCCAGCGAGAGCAGTGTGAAACGGCATGTGATTTTGCTACTCATGTGTTCTGCCACCCATGCGCACTTTGCCAGGAAGGCCGTG AGATTCGTCGCAGGGTGCCTCATCCTGGCATGAAGCCTCAGCCGATGCTGCTTATGCTCGCTCCTGGAGAGCAGACCATGGGACGCCAGGCTTAA
AA sequence Show only first row Show all	>Lus10023176 pacid=23170400 polypeptide=Lus10023176 locus=Lus10023176.g ID=Lus10023176.BGIv1.0 annot-version=v1.0 MADINNKNTANTPSSCNEDRAESSPLLDKKMDEQASDAKTAASKSAVRGWTANGVPLGHGNVVGQPMNRAQWDSGICACLGRNDEFCSSDLEVCLIGSVA PCVLHGSNAERLGSTPGTFTNHCLPYTGLYLIGNSLFGWNCLAPWFSYPGRTAMRRRFNLEAKVEPPYLKTLIFLWKCFVIGLGQGSCEALNRSCGCCGS CLEDEFQREQCETACDFATHVFCHPCALCQEGREIRRRVPHPGMKPQPMLLMLAPGEQTMGRQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	0	1
AT3G12630		SAP5	stress associated protein 5, A...		Lus10015697 [exp]	2.0	0.8914
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	2.4	0.8944
AT3G01170			Ribosomal protein L34e superfa...		Lus10005234 [exp]	5.2	0.8714
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	6.3	0.8830
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10040878 [exp]	7.2	0.8457
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	8.1	0.8655
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	8.5	0.8756
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	8.9	0.8715
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10005746 [exp]	10.1	0.8840
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Lus10031245 [exp]	11.1	0.8403

Compare expression of checked genes

Lus10023176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.