Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09740 348 / 1e-121 ATSYP71, SYP71 syntaxin of plants 71 (.1) AT3G61450 280 / 3e-95 ATSYP73, SYP73 syntaxin of plants 73 (.1.2) AT3G45280 279 / 2e-94 ATSYP72, SYP72 syntaxin of plants 72 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015075 [exp] 447 / 5e-161 AT3G09740 417 / 3e-149 syntaxin of plants 71 (.1) Lus10019925 [exp] 402 / 6e-143 AT3G09740 419 / 2e-149 syntaxin of plants 71 (.1) Lus10026495 [exp] 392 / 6e-139 AT3G09740 408 / 5e-145 syntaxin of plants 71 (.1) Lus10036118 [exp] 298 / 8e-102 AT3G45280 363 / 3e-127 syntaxin of plants 72 (.1) Lus10036377 [exp] 298 / 1e-97 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10014759 [exp] 292 / 2e-95 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10007411 [exp] 59 / 5e-11 AT3G09740 65 / 1e-13 syntaxin of plants 71 (.1) Lus10037092 [exp] 42 / 0.0002 AT1G13890 327 / 1e-113 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10016577 [exp] 42 / 0.0002 AT1G79590 319 / 1e-111 syntaxin of plants 52 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129500 [exp] 359 / 4e-126 AT3G09740 377 / 3e-133 syntaxin of plants 71 (.1) Potri.016G088200 [exp] 355 / 1e-124 AT3G09740 384 / 3e-136 syntaxin of plants 71 (.1) Potri.014G087400 [exp] 303 / 3e-104 AT3G09740 352 / 2e-123 syntaxin of plants 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10023178 pacid=23170294 polypeptide=Lus10023178 locus=Lus10023178.g ID=Lus10023178.BGIv1.0 annot-version=v1.0 ATGAGCGTGATCGACCTTCTCACAAGAGTCGACTCAATCTGCCAGAAGTACGAGAGATACGACGTCGACAAGCAGAAGAATCTCAATGTCTCCGGCGACG ACGCTTTCGCTCGCGGATACGCTGCAGTTGACGCCGAAATCGAAGCCGCTCTTGAGAAATCAGAACTTGCTGCCAGTGAGAAGAGTAAGGCGTCCACTGT AGCTCTCAATGCCGAGCTTCGTCGAACCAAGGCAAGACTGCTAGAAGAAGTTCCAAAGTTGCAGAGGCTTGCGGTAAAGAAGGTAAAAGGCCTTTCTACA GAAGAGCTTACTGCCCGTAATGACTTGGTTCTTGCATTGCCTGACAGAATCCAAGCTATTCCAGATGGAAATACAGCTCCACTGAAACAAACTGGAGGTT GGGGACCCTCAGCTTCCCGCACAGAAATCAAGTTTGATTCAGATGGCCGTTTTGATGATGAATATTTTCAAGAATCTGAGCAGTCGAGTCAGTTTAGGCA GGAGTATGAAACACGTAAAAAGAAGCAGGATCATGGTCTGGAGATGATCTCCGAAGGTTTGGATACTTTGAAGAACATGGCTCATGACATGAATGAGGAA ATGGACAGGCAAGCTCCTCTGGCGGATGAAATTGATGCCAAGGTGGATAAGGCAGCTTCTGATCTTAAGAACACTAATGTTAGACTGAAGGACACTGTTA CACAGTTACGATCCAGCAGAAACTTCTGCATCGATATTGTTTTGTTGTGCGTGATATTGGGCATTGCTGCTTATCTGTTCAATGCGCTGAAGAACTGA
AA sequence Show only first row Show all	>Lus10023178 pacid=23170294 polypeptide=Lus10023178 locus=Lus10023178.g ID=Lus10023178.BGIv1.0 annot-version=v1.0 MSVIDLLTRVDSICQKYERYDVDKQKNLNVSGDDAFARGYAAVDAEIEAALEKSELAASEKSKASTVALNAELRRTKARLLEEVPKLQRLAVKKVKGLST EELTARNDLVLALPDRIQAIPDGNTAPLKQTGGWGPSASRTEIKFDSDGRFDDEYFQESEQSSQFRQEYETRKKKQDHGLEMISEGLDTLKNMAHDMNEE MDRQAPLADEIDAKVDKAASDLKNTNVRLKDTVTQLRSSRNFCIDIVLLCVILGIAAYLFNALKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10023178 [exp]	0	1
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10015075 [exp]	3.2	0.8831
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	15.3	0.8517
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10026834 [exp]	15.7	0.8347
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	22.8	0.8346
AT5G57330			Galactose mutarotase-like supe...		Lus10015540 [exp]	28.4	0.8324
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	36.2	0.8309
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	43.3	0.8191
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10023242 [exp]	48.2	0.8197
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10028774 [exp]	49.0	0.7330
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10028280 [exp]	50.3	0.7780

Compare expression of checked genes

Lus10023178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.