Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65980 268 / 2e-93 TPX1 thioredoxin-dependent peroxidase 1 (.1.2) AT1G65970 259 / 3e-90 TPX2 thioredoxin-dependent peroxidase 2 (.1) AT1G60740 257 / 4e-89 Thioredoxin superfamily protein (.1) AT1G65990 189 / 9e-58 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein (.1) AT3G52960 177 / 1e-56 Thioredoxin superfamily protein (.1) AT3G06050 108 / 5e-30 PRXIIF, ATPRXIIF peroxiredoxin IIF (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015077 [exp] 328 / 2e-117 AT1G65980 268 / 3e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10023662 [exp] 314 / 2e-111 AT1G65980 264 / 5e-92 thioredoxin-dependent peroxidase 1 (.1.2) Lus10002843 [exp] 177 / 1e-56 AT3G52960 290 / 3e-100 Thioredoxin superfamily protein (.1) Lus10003373 [exp] 177 / 2e-56 AT3G52960 291 / 3e-100 Thioredoxin superfamily protein (.1) Lus10021932 [exp] 109 / 7e-30 AT3G06050 317 / 6e-111 peroxiredoxin IIF (.1) Lus10041218 [exp] 94 / 8e-23 AT3G06050 243 / 3e-79 peroxiredoxin IIF (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423500 [exp] 283 / 1e-99 AT1G65980 285 / 5e-100 thioredoxin-dependent peroxidase 1 (.1.2) Potri.018G083500 [exp] 280 / 5e-98 AT1G65980 280 / 4e-98 thioredoxin-dependent peroxidase 1 (.1.2) Potri.013G102100 [exp] 175 / 4e-56 AT3G52960 278 / 1e-95 Thioredoxin superfamily protein (.1) Potri.019G024000 [exp] 101 / 3e-27 AT3G06050 311 / 2e-109 peroxiredoxin IIF (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin
Representative CDS sequence Show only first row Show all	>Lus10023180 pacid=23170446 polypeptide=Lus10023180 locus=Lus10023180.g ID=Lus10023180.BGIv1.0 annot-version=v1.0 ATGGCTCCGATAGCTGCCGGTGCTTCCTTACCTGACGGAACTCTCGCTCACTTCGACGAGAACGATCAGCTCCAGCAGGTCTCCATCCACTCGCTCGCCG CCGGCAAGAAGGTCGTCATCGTCGGTGTCCCCGGCGCCTTCACTCCAACTTGCAGCTTGAAGCATGTACCTGGATTCATCGAAAGAGCGGATGACCTCAA AGCCAAAGGTGTTGCAGAGATAATCACTATTAGCGTGAATGATCCATTTGTGATGAAAGCTTGGGCAAAGACCTTCCCAGAGAACAAGCACGTGAAGTTC TTGGCAGATGGCTCTGCAACTTACACCCATGCTCTGGGTGTTGAGCTTGACCTAAAAGAGAAGGGACTAGGGATCAGGTCAAGGAGGTTTGCTCTACTGG TCGATGACCTCAAGGTGAAGGCTGCAAACATTGAAGAGGGTGGAGACTTCACAGTTTCAAGTGTTGATGATATCATCAAGGCCCTTGATGCTTGA
AA sequence Show only first row Show all	>Lus10023180 pacid=23170446 polypeptide=Lus10023180 locus=Lus10023180.g ID=Lus10023180.BGIv1.0 annot-version=v1.0 MAPIAAGASLPDGTLAHFDENDQLQQVSIHSLAAGKKVVIVGVPGAFTPTCSLKHVPGFIERADDLKAKGVAEIITISVNDPFVMKAWAKTFPENKHVKF LADGSATYTHALGVELDLKEKGLGIRSRRFALLVDDLKVKAANIEEGGDFTVSSVDDIIKALDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10023180 [exp]	0	1
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10011738 [exp]	1.0	0.8390
AT5G24660		LSU2	response to low sulfur 2 (.1)		Lus10015594 [exp]	3.2	0.7194
AT1G68570			Major facilitator superfamily ...		Lus10017817 [exp]	21.5	0.5702
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004972 [exp]	23.9	0.6325
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10040456 [exp]	26.8	0.6244
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10020390 [exp]	34.9	0.6124
AT3G62820			Plant invertase/pectin methyle...		Lus10007873 [exp]	40.0	0.6323
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10000556 [exp]	52.7	0.5869
AT3G04310			unknown protein		Lus10032791 [exp]	63.0	0.5575
AT1G78020			Protein of unknown function (D...		Lus10000693 [exp]	72.3	0.5860

Compare expression of checked genes

Lus10023180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.