Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09770 364 / 4e-126 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT3G53410 336 / 3e-116 RING/U-box superfamily protein (.1) AT5G03200 315 / 3e-107 RING/U-box superfamily protein (.1) AT5G19080 263 / 2e-86 RING/U-box superfamily protein (.1) AT3G06140 248 / 6e-81 RING/U-box superfamily protein (.1) AT2G35330 51 / 6e-07 RING/U-box superfamily protein (.1.2) AT3G23280 49 / 3e-06 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT2G21380 48 / 5e-06 Kinesin motor family protein (.1) AT1G30860 48 / 5e-06 RING/U-box superfamily protein (.1) AT1G59560 47 / 6e-06 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015080 [exp] 530 / 0 AT3G09770 364 / 9e-125 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037412 [exp] 325 / 2e-111 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10041300 [exp] 321 / 1e-109 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10004419 [exp] 271 / 2e-89 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10034030 [exp] 270 / 6e-89 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10002487 [exp] 48 / 4e-06 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10010392 [exp] 47 / 4e-06 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10008163 [exp] 47 / 6e-06 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10027994 [exp] 47 / 7e-06 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128700 [exp] 422 / 2e-149 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.016G089000 [exp] 339 / 1e-116 AT3G09770 301 / 1e-100 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.008G202700 [exp] 277 / 7e-92 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 270 / 8e-89 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 258 / 6e-84 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 252 / 9e-82 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.001G074800 [exp] 52 / 4e-07 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.003G156400 [exp] 49 / 2e-06 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.016G116300 [exp] 49 / 2e-06 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.001G251900 [exp] 48 / 3e-06 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023182 pacid=23170343 polypeptide=Lus10023182 locus=Lus10023182.g ID=Lus10023182.BGIv1.0 annot-version=v1.0 ATGCCGCTCCCGCTTCCGGCCCCCTATGATCATCACCACCACCACCGAGGCGCCGTCGATCATGCTCACTGGGTCGGCGGGAGGTACCCTTGCGGCCCGG TGGTTCAGCCGCCCACGCCTTATGTGGAGCACCAGAAGGCTGTCACCATTCGGAACGATGTCAATTTGAAGAAGGAGACGCTCAAGCTGGAGCCCGATGT GGAGAATCCTGGCATGTCTCTCGTCTCCTTCACCTTTGATGCCACTGTTGCTGGAAGCATCACCATTATCTTCTTTGCTAAAGAGGGTGAGAACTGTGTC CTAACGCCAACAGATGAAGACAGTTTTCCAGCAGTGACGGTAGGTTTTGAGCAAGGTCTTGGTCAAAAGTTCAGGCAGGCATCTGGAACAGGGATCGACT TGTCAAAACTGGATGAGGAGAAGTTGGTAAAGCAGGGTGAGGTTGATCTGTATCCTCTTGTGGTGAAGGCGGAATCGAACGGATCAGATAGAAATGACAC CACGCTTGGTAGCTCGAATTCTCAGATAACTCAGGCAGTGTTTGAGAAGGAGAAAGGAGAGTATCATGTGAAGGTAGTGAAACAGATTCTGTTTGTGAAT GGAATGAGGTATGAGCTGCAGGAGATATACGGGATCGGGAACACTGTCGAAGGTGAAGTTGATGCAAATGACCCCGGTAAAGAATGTGTTATTTGCTTGT CCGAACCACGAGACACCACTGTTCTTCCTTGCCGGCACATGTGCATGTGCAGCGGCTGTGCCAAGGTGTTGAGGTTCCAAACGAATCGATGCCCAATCTG TAGACAGCCAGTGGAGAGGCTTTTAGAGATTAAAGTTAACAATGCAGCAGACGAAGAATAA
AA sequence Show only first row Show all	>Lus10023182 pacid=23170343 polypeptide=Lus10023182 locus=Lus10023182.g ID=Lus10023182.BGIv1.0 annot-version=v1.0 MPLPLPAPYDHHHHHRGAVDHAHWVGGRYPCGPVVQPPTPYVEHQKAVTIRNDVNLKKETLKLEPDVENPGMSLVSFTFDATVAGSITIIFFAKEGENCV LTPTDEDSFPAVTVGFEQGLGQKFRQASGTGIDLSKLDEEKLVKQGEVDLYPLVVKAESNGSDRNDTTLGSSNSQITQAVFEKEKGEYHVKVVKQILFVN GMRYELQEIYGIGNTVEGEVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNNAADEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	0	1
AT3G52105			unknown protein		Lus10011321 [exp]	1.0	0.9196
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	1.7	0.8985
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	2.0	0.9103
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10029162 [exp]	2.4	0.8860
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	3.7	0.8845
AT1G13930			unknown protein		Lus10036965 [exp]	3.9	0.8558
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	4.0	0.8956
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10041500 [exp]	4.8	0.8409
AT5G40470			RNI-like superfamily protein (...		Lus10002515 [exp]	4.9	0.8817
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10038833 [exp]	5.1	0.8613

Compare expression of checked genes

Lus10023182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.