Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37170 490 / 3e-177 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT2G37180 483 / 3e-174 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT3G53420 479 / 8e-173 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT5G60660 471 / 1e-169 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT3G54820 468 / 2e-168 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT2G16850 446 / 8e-160 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G39010 445 / 1e-159 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) AT4G35100 444 / 2e-159 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT4G00430 396 / 4e-140 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 390 / 8e-138 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019934 [exp] 519 / 0 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023515 [exp] 481 / 1e-173 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10040399 [exp] 469 / 8e-169 AT3G54820 474 / 1e-170 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10014978 [exp] 451 / 6e-162 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 451 / 1e-161 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 450 / 1e-161 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10028273 [exp] 390 / 1e-137 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10041397 [exp] 384 / 2e-135 AT3G53420 412 / 6e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Lus10026504 [exp] 379 / 2e-134 AT5G60660 358 / 1e-126 plasma membrane intrinsic protein 2;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128200 [exp] 517 / 0 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 516 / 0 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 513 / 0 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.010G222700 [exp] 494 / 9e-179 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.008G039600 [exp] 492 / 6e-178 AT3G53420 445 / 1e-159 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Potri.016G089500 [exp] 486 / 7e-176 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.004G176300 [exp] 447 / 1e-160 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.009G136600 [exp] 441 / 8e-158 AT4G35100 493 / 1e-178 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.016G113300 [exp] 399 / 2e-141 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G098100 [exp] 390 / 1e-137 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10023184 pacid=23170325 polypeptide=Lus10023184 locus=Lus10023184.g ID=Lus10023184.BGIv1.0 annot-version=v1.0 ATGGCCAAGGACGTAGAAGGACAAGTACCCGGATTCCAAACCAAGGACTACCAAGATCCACCCCCTGCCCCACTCATCGACGCAGAGGAGCTAACCCAAT GGTCACTCTACAGAGCAGTCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTTTACATCACCGTCTTGACAGTCATCGGCTACAAATCCCAGGTCGATCC CAACAAGCCCTCCGTCGACCCTTGCGGCGGCGTCGGCATTCTGGGAATCGCCTGGGCCTTCGGCGGAATGATCTTCGTCCTCGTCTACTGTACCGCCGGA ATCTCCGGCGGCCACATCAACCCGGCGGTGACGTTCGGGCTTTTTTTGGCCAGGAAAGTGTCTTTAGTCAGAGCCGTCTTGTACATGGTGGCTCAGTGCC TTGGAGCCATATGCGGGTGTGGGCTAGTCAAGGCTTTCCAGAAGTCTTACTACACAAGGTACGGCGGTGGAGCCAATGAGCTTAGCGCAGGGTACAACAA GGGAACTGGATTGGGTGCTGAAATCATTGGCACTTTCGTACTTGTCTACACTGTTTTCTCTGCCACTGACCCCAAGAGAAACGCCAGAGACTCCCATGTC CCTGTGTTGGCACCACTTCCAATTGGGTTCGCAGTGTTCATGGTCCACCTGGCTACGATCCCAGTGACTGGAACAGGGATCAACCCGGCAAGGAGCTTCG GAGCAGCTGTGTTCTACAACCAAGACAAGGCATGGGATGGTCATTGGATGTTCTGGGTCGGACCATTCATTGGAGCAGCAATTGCAGCAATATACCACCA GTATATACTCAGAGCTGGTGCCATCAAGGCACTAGGGTCCTTCAGGAGCTCAGCCAACAACTAA
AA sequence Show only first row Show all	>Lus10023184 pacid=23170325 polypeptide=Lus10023184 locus=Lus10023184.g ID=Lus10023184.BGIv1.0 annot-version=v1.0 MAKDVEGQVPGFQTKDYQDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVLTVIGYKSQVDPNKPSVDPCGGVGILGIAWAFGGMIFVLVYCTAG ISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELSAGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHV PVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVFYNQDKAWDGHWMFWVGPFIGAAIAAIYHQYILRAGAIKALGSFRSSANN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023184 [exp]	0	1
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10015083 [exp]	1.0	0.9456
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10019934 [exp]	4.2	0.8670
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10014765 [exp]	4.5	0.8688
AT3G14280			unknown protein		Lus10003937 [exp]	5.5	0.8821
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10005652 [exp]	5.9	0.7998
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10028273 [exp]	13.3	0.8933
AT1G70000	MYB		myb-like transcription factor ...		Lus10036678 [exp]	13.5	0.8252
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10026504 [exp]	14.6	0.7901
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10016637 [exp]	17.1	0.8605
AT3G14280			unknown protein		Lus10037453 [exp]	20.0	0.8182

Compare expression of checked genes

Lus10023184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.