Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 368 / 1e-121 Plant protein of unknown function (DUF247) (.1) AT3G50150 72 / 4e-13 Plant protein of unknown function (DUF247) (.1) AT3G44710 69 / 4e-12 Plant protein of unknown function (DUF247) (.1) AT3G50120 67 / 1e-11 Plant protein of unknown function (DUF247) (.1) AT3G50160 67 / 2e-11 Plant protein of unknown function (DUF247) (.1) AT2G36430 66 / 3e-11 Plant protein of unknown function (DUF247) (.1) AT3G50170 66 / 4e-11 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 64 / 1e-10 Plant protein of unknown function (DUF247) (.1) AT3G50130 64 / 2e-10 Plant protein of unknown function (DUF247) (.1) AT5G22560 63 / 2e-10 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015084 [exp] 929 / 0 AT3G02645 382 / 4e-127 Plant protein of unknown function (DUF247) (.1) Lus10031159 [exp] 176 / 2e-48 AT3G02645 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) Lus10022538 [exp] 148 / 2e-38 AT3G02645 86 / 2e-17 Plant protein of unknown function (DUF247) (.1) Lus10019721 [exp] 110 / 3e-25 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10016396 [exp] 102 / 1e-22 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10009504 [exp] 95 / 2e-20 AT3G02645 196 / 3e-56 Plant protein of unknown function (DUF247) (.1) Lus10026964 [exp] 91 / 4e-19 AT3G02645 118 / 3e-28 Plant protein of unknown function (DUF247) (.1) Lus10033668 [exp] 78 / 7e-15 AT3G02645 165 / 8e-45 Plant protein of unknown function (DUF247) (.1) Lus10004515 [exp] 74 / 7e-15 AT3G50120 112 / 4e-29 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085300 [exp] 476 / 1e-163 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.017G124100 [exp] 456 / 7e-156 AT3G02645 474 / 7e-163 Plant protein of unknown function (DUF247) (.1) Potri.001G337900 [exp] 393 / 3e-131 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.003G024100 [exp] 373 / 3e-123 AT3G02645 441 / 8e-150 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 368 / 2e-121 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.017G062900 [exp] 355 / 3e-116 AT3G02645 427 / 8e-145 Plant protein of unknown function (DUF247) (.1) Potri.001G205100 [exp] 354 / 7e-116 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.003G205900 [exp] 287 / 6e-90 AT3G02645 332 / 2e-107 Plant protein of unknown function (DUF247) (.1) Potri.003G208400 [exp] 74 / 4e-14 AT5G11290 182 / 3e-55 Plant protein of unknown function (DUF247) (.1) Potri.003G209300 [exp] 74 / 5e-14 AT4G31980 211 / 4e-62 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10023185 pacid=23170436 polypeptide=Lus10023185 locus=Lus10023185.g ID=Lus10023185.BGIv1.0 annot-version=v1.0 ATGTCGTTCAAATCAAATACGAATGACTTGAACGACCAACGATGGATAATCAACATTCGAAGATCCCTCGAAGAACACGACAACTTAGCTAAAACCAACC ACCTCGATGTTCAAGAGGAAGAAGAAGAACTCCCTGCTCGAATATTCAACGTTCCGAAATCCCTTCTAGAATCACACCCTTACTCCTACACCCCTCAACA AGTTGCCATCGGCCCTTACCATCACCATCGTCCCGAGCTCCACTATGCCTCCCGTCACAAGCATTCGTCCGCCAAGAGGCTGCAAAAACGATTGCAGCCT CCAGGCAAGTATTGTGATATGGTGGACCAGATCGCCAGTTTGGTCCCCAAGATTCGAGATTATTACCACAAGTACCTTGATTTCGGCGACGTGACCTTGG CGTGGATGATGGCCATTGATGGGTCATTACTCCTTGAGCTCCTTGGGATGACCTTAGCAACTGCGGGTTCGAAGAACAATGTCATGATGAGGGACATTGT GATGCTTGAGAATCAGATTCCGATGATTGTGTTGAGCAAGATTTCGGAGGTTCAGTTTCGGTCCAAGGAGATTGGTGATAGTAATCTTAAGAAAATGTTG GTTGGATTTTGGAAGGAGGTTTCACCGTTTATGATGATGGATGATTTTGTAGGAGTTGATCATATCTTGCACAGTACTGCTCATCTTCTTGATTATTTGT ACGCAACGATTGTTCCTGATGAGGTAGTAAAGGAAGAAGCAACAAGTTCAGATCAAATGACAGAGTTCAACGGCAGTGAAAGTTCATCAAACAGAGGTGT CAATCTCAGTACCATTAACAGCATTAGCAACAAGCTTACCTCTAAGCTAAACAAAGACATTTTCAAGAGACTTGTGCAGTCAAAGCCAGTCAAACTCTTC TTCAGATTACCACTCACAATTCTCTCCACAGTTTTACCAGCTTTCGCGATTCTTAAACACCCGATCGAGCATTTCCTCTTCGCGTCACCAACGCACAACA AACCAGATCCCTCCATCTCGAACAGATTCAACCATCTAGATCGACCTCCTTTACTAGAGGAGATCGCCATCCCATCAGTCACTGAGCTAGTAAGCTCAGG TATCCGAATTGTGCCCACCACTGAGAGCAACAGCATCTCGAGCATTACCTTTGACGCCAAGGCATCAGAGCTGCATCTGCCGATAGTCAGACTGGATGTG AACACTGAGGTGGTGTTGAGAAACTTGGTTGCGTACGAGGCCTCGATTTCAGAAGGCCGAGCACTCGTGCTCGCACGTTACACGGAGCTAATGAACGGGA TAGTGGACACGGGGGAGGATGTGAAGCTGTTGAGGGAGAGAGGTGTGGTATTGAACCACTTGAAGAGCGACGATGAAGCCGCGGATTTTTGGAACGGAAT GAACAAGTCTGTGAGGCTTACCAAAGTGGGGTTTCTTGATGATGTGATCAGAGAGGTGAATGTGTACTATAATAGCCGGTGGAAGGTGAGGGTTGGGAAA ATCTTGAGAAATTATGTGTTTGCTTCTTGGCAGTCACTGACACTATTTGCAGTTCTTTTGATCTTGGCGTTGATGGTATTCCAAGTATTCTGCTCGCTTT ATAACTGGTATCGTATTCTCAGTACCGGAAGGGCTGTAAGGAGGACGGCTATGTAG
AA sequence Show only first row Show all	>Lus10023185 pacid=23170436 polypeptide=Lus10023185 locus=Lus10023185.g ID=Lus10023185.BGIv1.0 annot-version=v1.0 MSFKSNTNDLNDQRWIINIRRSLEEHDNLAKTNHLDVQEEEEELPARIFNVPKSLLESHPYSYTPQQVAIGPYHHHRPELHYASRHKHSSAKRLQKRLQP PGKYCDMVDQIASLVPKIRDYYHKYLDFGDVTLAWMMAIDGSLLLELLGMTLATAGSKNNVMMRDIVMLENQIPMIVLSKISEVQFRSKEIGDSNLKKML VGFWKEVSPFMMMDDFVGVDHILHSTAHLLDYLYATIVPDEVVKEEATSSDQMTEFNGSESSSNRGVNLSTINSISNKLTSKLNKDIFKRLVQSKPVKLF FRLPLTILSTVLPAFAILKHPIEHFLFASPTHNKPDPSISNRFNHLDRPPLLEEIAIPSVTELVSSGIRIVPTTESNSISSITFDAKASELHLPIVRLDV NTEVVLRNLVAYEASISEGRALVLARYTELMNGIVDTGEDVKLLRERGVVLNHLKSDDEAADFWNGMNKSVRLTKVGFLDDVIREVNVYYNSRWKVRVGK ILRNYVFASWQSLTLFAVLLILALMVFQVFCSLYNWYRILSTGRAVRRTAM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02645			Plant protein of unknown funct...		Lus10023185 [exp]	0	1
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10012743 [exp]	4.7	0.9223
AT1G67623			F-box family protein (.1)		Lus10006434 [exp]	11.0	0.9218
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	14.4	0.9066
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	16.7	0.9037
AT5G55690	MADS		MADS-box transcription factor ...		Lus10014095 [exp]	17.3	0.8719
AT5G48140			Pectin lyase-like superfamily ...		Lus10013780 [exp]	19.3	0.8946
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029333 [exp]	21.6	0.8698
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	21.8	0.9011
AT3G02750			Protein phosphatase 2C family ...		Lus10022683 [exp]	24.5	0.8860
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	25.6	0.8988

Compare expression of checked genes

Lus10023185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.