Plant FIBer expression Database

Lus10023187 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37195 129 / 5e-39 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002229
[exp]
242 / 1e-83 AT2G37195 132 / 1e-40 unknown protein
Lus10026508
[exp]
227 / 1e-77 AT2G37195 123 / 3e-37 unknown protein
Lus10019937
[exp]
180 / 9e-59 AT2G37195 103 / 1e-28 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G090000
[exp]
217 / 6e-74 AT2G37195 132 / 8e-41 unknown protein
Potri.006G127800
[exp]
215 / 5e-73 AT2G37195 134 / 1e-41 unknown protein
PFAM info
Representative CDS sequence
>Lus10023187 pacid=23170357 polypeptide=Lus10023187 locus=Lus10023187.g ID=Lus10023187.BGIv1.0 annot-version=v1.0
ATGGCCGGCGAGAGAAAGATGATCTTGGTGGGTTTGGTAGTGGCAATGCTTTTGGGGACTGCAGTTTACCTGAGGCTTTGGACCATTGACTACGCAATTT
CCTCCGATGACACTGAGCTCATAAGAAGACAATTCGATCTGGCTAATAGAGAAGCAATGGATGAATCTGCAGAGTGGAGGATGAAGTATGATGAAGAGGC
AGAAAGAGCAGCCAAGTGTGACAAGGAATTGATTGAGATCAAGCAGAATGTGGACGATGCTGCTAGTGTCAACCAACAGTTGTTGGTTCTGCAAAAGGAA
AACATGGCCTTGATCGGACGAATGGAAGTATTGCACAAGGAGCTGGCCGCGACCAAGTCAAAATGTCGCTCAAACTCTTTCTGCGTGGCTCAACTTGAAC
AACGATTGCAGAGGAATCCTTACGTGACTCTTTCTGTTGATGTTTGTCATTCGAGGCCACAAGGTTCGCTTCAGTATCACTGA
AA sequence
>Lus10023187 pacid=23170357 polypeptide=Lus10023187 locus=Lus10023187.g ID=Lus10023187.BGIv1.0 annot-version=v1.0
MAGERKMILVGLVVAMLLGTAVYLRLWTIDYAISSDDTELIRRQFDLANREAMDESAEWRMKYDEEAERAAKCDKELIEIKQNVDDAASVNQQLLVLQKE
NMALIGRMEVLHKELAATKSKCRSNSFCVAQLEQRLQRNPYVTLSVDVCHSRPQGSLQYH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37195 unknown protein Lus10023187
[exp]
0 1
AT3G61113 Ubiquitin related modifier 1 (... Lus10036551
[exp]
3.2 0.8708
AT1G12390 Cornichon family protein (.1) Lus10009295
[exp]
3.9 0.8338
AT2G11520 CRCK3 calmodulin-binding receptor-li... Lus10028347
[exp]
4.0 0.8299
AT3G50360 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) Lus10009353
[exp]
4.7 0.8344
AT5G64180 unknown protein Lus10013157
[exp]
12.0 0.8122
AT1G04960 Protein of unknown function (D... Lus10014626
[exp]
15.2 0.8195
AT1G63460 ATGPX8 glutathione peroxidase 8 (.1) Lus10008023
[exp]
16.4 0.8128
AT3G13970 APG12B, APG12 AUTOPHAGY 12 B, AUTOPHAGY 12, ... Lus10000432
[exp]
23.5 0.8291
AT3G07525 ATG10, ATATG10 autophagy 10, autophagocytosis... Lus10008745
[exp]
23.7 0.7477
AT4G31720 STG1, TAFII15, ... TBP-ASSOCIATED FACTOR 10, SALT... Lus10005077
[exp]
24.0 0.8172

Lus10023187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.