Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37220 191 / 3e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 152 / 6e-44 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 149 / 5e-43 CP31B chloroplast RNA-binding protein 31B (.1) AT3G53460 121 / 4e-32 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT1G60000 117 / 3e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 105 / 2e-26 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT3G52150 101 / 2e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G01080 81 / 1e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 74 / 4e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 70 / 1e-14 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002222 [exp] 329 / 2e-113 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 208 / 5e-66 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013801 [exp] 189 / 5e-56 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023723 [exp] 139 / 1e-38 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041952 [exp] 139 / 2e-38 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10017962 [exp] 137 / 3e-38 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10029372 [exp] 108 / 4e-27 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 104 / 1e-25 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10041602 [exp] 96 / 6e-23 AT3G52150 263 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G090700 [exp] 196 / 3e-61 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 174 / 7e-53 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 148 / 2e-42 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 144 / 1e-40 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 141 / 3e-40 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.008G172100 [exp] 136 / 3e-38 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 131 / 3e-36 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G202000 [exp] 110 / 4e-28 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G068300 [exp] 106 / 1e-26 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.009G065900 [exp] 97 / 1e-23 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10023191 pacid=23170387 polypeptide=Lus10023191 locus=Lus10023191.g ID=Lus10023191.BGIv1.0 annot-version=v1.0 ATGGCTTCCACAGCTACTACAGCCACGGCTTCGTCCCTAATAATCCCCAACACCAAGCCTTCATCTTTCACCTCCATTGCCAAGCCCACTTCCGTCTTCT TCGCCATACCTTCTTCCTCCTCGCCCCTCAAGCTTTCATGTCTCCAGCTCTCTATCCCTCATCTTTCTTCTTCTTTCTCCTCTCGTTTCGTGCGCAGGGT CTCCGTTTCCTCCGATTTCGACCAGGAGGATGGCGTGTTGATAGATGAAGATGAAGATGGAGATGACGATAGCGAGGATGGCGCCGCCGGTTACGCTCCT TCCCCTTCCCTCAAATTGTACGTCGGAAATCTCCCTTTCTCTGTCGACAGCGCTCAATTGGCCGGCGTCTTTGAGGCTGCTGGAAATGTTGAGATGGTTG AGGTGGTATATGACAAGATTTCTGGGAGGAGTAGGGGATTTGCATTTGTTACCATGTCTACTGTTGAGGAAGCTGAATCCGCTGCTCAGCAATTCAATGG ATATGAACTTGATGGAAGGCAATTGAGGGTGAATGCAGCAGGGAATCCTCCTCCCCGAGACAACTCCTCCCCGTTCGCTAGAGGTGGGGGCAGAGTTGCG GGAGGTGGTGGTGGTGGTGACGAGAACCGCCTGTATGTGGGTAACCTTTCATGGGGGGTTGACAACTCGCAACTTGAGGCTTTGTTCAGTGAGCACGGCA AGGTTGTGGACGCAAGGGTTGTTTATGATAGGGAAAGTGGTAGGTCAAGGGGCTTTGGTTTCGTGTCTTTCAGCTCTGCCGACGACATGAATAATGCCCT TGATTCCCTCGATGGCGCCGATTTGGACGGAAGATCGATTCGAGTTTCTGTGGCTGAATCTAGGCCAAGGCGTTTTTGA
AA sequence Show only first row Show all	>Lus10023191 pacid=23170387 polypeptide=Lus10023191 locus=Lus10023191.g ID=Lus10023191.BGIv1.0 annot-version=v1.0 MASTATTATASSLIIPNTKPSSFTSIAKPTSVFFAIPSSSSPLKLSCLQLSIPHLSSSFSSRFVRRVSVSSDFDQEDGVLIDEDEDGDDDSEDGAAGYAP SPSLKLYVGNLPFSVDSAQLAGVFEAAGNVEMVEVVYDKISGRSRGFAFVTMSTVEEAESAAQQFNGYELDGRQLRVNAAGNPPPRDNSSPFARGGGRVA GGGGGGDENRLYVGNLSWGVDNSQLEALFSEHGKVVDARVVYDRESGRSRGFGFVSFSSADDMNNALDSLDGADLDGRSIRVSVAESRPRRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10023191 [exp]	0	1
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10002222 [exp]	1.0	0.9528
AT5G66550			Maf-like protein (.1)		Lus10040470 [exp]	2.2	0.9403
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	2.4	0.9436
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10030326 [exp]	2.8	0.9450
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10031981 [exp]	4.0	0.9414
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	4.9	0.9369
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10003289 [exp]	5.1	0.9210
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10031946 [exp]	5.3	0.9309
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10023202 [exp]	6.9	0.9288
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	8.5	0.9286

Compare expression of checked genes

Lus10023191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.